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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctgttgcctttagttttgtgctgaaaagaaacattttgattgttgcagACTTTGCACAAGCTTTTTATTATCAATGCTGGTGCTGGATTCAGGCTGTTATGGAACACAGTGAAGGGGTTCCTAGATCCCAAAACGACTTCTAAAATCA

Basic information

species Selaginella moellendorffii
transcript EFJ21359
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ23906 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA04G01220.1 (Glycine max), 3'ss of exon 5
---------------------------------------------------------------------------------gtaagtctgttgcctttagtt-ttgtgctgaaaagaaacattt-tgattgttgcagACTTTGCACAAGCTTTTTATTATCAATGCTGGTGCTGGATTCAGGCTGTTATGGAACACAGTGAAGGGGTTCCTAGATCCCAAAACGACTTCTAAAATCA
                                                                                 | |||    |   || | ||    |||     | ||  | ||| | | || | |||||| |   | |  | |||||||| ||||||||  ||||||| |||||||| |||||||| || |||   || || ||||||||||| |||||||| ||  
gtgtgttgtcttgttccctgtcacgtgtaattaattgctattttcttttggaatgctggttttgtcagttattgcaaattcgaaagatgatatactatggtaacagtggactgatgattcttttattaatgatacagACTCTTTGCCAAATGTTTATTATAAATGCTGGGCCTGGATTTAGGCTGTTGTGGAACACTGTCAAGTCTTTTCTCGATCCCAAAACAACTTCTAAGATTC

upper sequence: EFJ23906 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 6
-------------------------------------------------------gtaagtctgttgcctttagttttgtgctgaaa--agaaacattttgattgttgcagACTTTGCACAAGCTTTTTATTATCAATGCTGGTGCTGGATTCAGGCTGTTATGGAACACAGTGAAGGGGTTCCTAGATCCCAAAACGACTTCTAAAATCA
                                                        | |    | || ||  |  | ||  ||| |    |||   | || | || |||||||| |   | |  | |||||||||||||||||| |||| || |||||| | |||||||| || |||   || |||||||||||||| ||||| || ||  
gtattcaacctttttctgttgacatgataagctatagttgtaatccatttcaaaattgatataggtgactgaatatgtgccctggatcttgaactctcttaactgctgcagACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTC

upper sequence: EFJ23906 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: Vv03s0038g04480.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------------------------------------------------gtaagtctgttgcctttagttttgtgctgaaaagaaacattttgattgttgcagACTTTGCACAAGCTTTTTATTATCAATGCTGGTGCTGGATTCAGGCTGTTATGGAACACAGTGAAGGGGTTCCTAGATCCCAAAACGACTTCTAAAATCA
                                                                    |   ||   |     |  |    || || |     |  || |   | ||||||||  |   |    | || || || ||||||||| |||||||||||||||||||||| || || ||    ||||| || ||||| || ||||| || ||  
gtactcattttatctgttagcctaagttgatgtgccagaacttcttgattcctttttggaaaaaaggatgcttcgactttgcctgatccaatg-tggatgtggatgttctatctattgcagACACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtctgttgcctttagttttgtgctgaaaagaaacattttgattgttgcagACTTTGCACAAGCTTTTTATTATCAATGCTGGTGCTGGATTCAGGCTGTTATGGAACACAGTGAAGGGGTTCCTAGATCCCAAAACGACTTCTAAAATCA
                                        ttttgat  putative branch site (score: 4)
                               aaaagaaacatttt  TA-rich tract