1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagtggagaaaaaatcgatctctttaattgactccttgttgtagGCGAGCTACATTGGAGAACTGTGTCAGTGTATAGTGATCCCAACAATGGCCAG
species | Selaginella moellendorffii |
transcript | EFJ20519 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAAGAGGTTCTTAACAGAGGATGCGAGTTTCTCAAGCGCTCCAAGAAAG GCGAGCTACATTGGAGAACTGTGTCAGTGTATAGTGATCCCAACAATGGCCEST: gi|169089021|gb|FE496249.1|FE496249
genomic: GCAAGAGGTTCTTAACAGAGGATGCGAGTTTCTCAAGCGCTCCAAGAAAGgtagtggaga ... cttgttgtagGCGAGCTACATTGGAGAACTGTGTCAGTGTATAGTGATCCCAACAATGGCC
EST: GCAAGAGGTTCTTAACAGAGGATGCGAGTTTCTCAAGCGCTCCAAGAAAG GCGAGCTACATTGGAGAACTGTGTCAGTGTATAGTGATCCCAACAATGGCCEST: gi|169023371|gb|FE431360.1|FE431360
genomic: GCAAGAGGTTCTTAACAGAGGATGCGAGTTTCTCAAGCGCTCCAAGAAAGgtagtggaga ... cttgttgtagGCGAGCTACATTGGAGAACTGTGTCAGTGTATAGTGATCCCAACAATGGCC
EST: GCAAGAGGTTCTTAACAGAGGATGCGAGTTTCTCAAGCGCTCCAAGAAAG GCGAGCTACATTGGAGAACTGTGTCAGTGTATAGTGATCCCAACAATGGCC
genomic: GCAAGAGGTTCTTAACAGAGGATGCGAGTTTCTCAAGCGCTCCAAGAAAGgtagtggaga ... cttgttgtagGCGAGCTACATTGGAGAACTGTGTCAGTGTATAGTGATCCCAACAATGGCC
gtagtggagaaaaaatcgatctctttaattgactccttgttgtagGCGAGCTACATTGGAGAACTGTGTCAGTGTATAGTGATCCCAACAATGGCCAG
aattgac putative branch site (score: 6)
ctccttgtt CT-rich tract
agaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtggagaaaaaatcgatctctttaattgactccttgttgtagGCGAGCTACATTGGAGAACTGTGTCAGTGTATAGTGATCCCAACAATGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA