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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttgaagttcttttcagttgcaaatggtgtgagcactgacaggctacttttcccgtccagCGTAAACACTGAATTGTATAAAATTCTGGTGAAAGAACTCGCGCATCAACTGGATCTACAATTTGCGTCGAACATAGCAACTCGCTCTTCTGGAATGGTT

Basic information

species Selaginella moellendorffii
transcript EFJ20213
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169049159|gb|FE457147.1|FE457147
EST:     CTTTTATGGTCACACCACTCCCAG                         CGTAAACACTGAATTGTATAAAATTCTGGTGAAAGAACTCGCGCATCAACT
genomic: CTTTTATGGTCACACCACTCCCAGgtactttgaa ... tcccgtccagCGTAAACACTGAATTGTATAAAATTCTGGTGAAAGAACTCGCGCATCAACT
EST: gi|169049160|gb|FE457148.1|FE457148
EST:     ATCATTCTGGATGTCCCTCTTGTTTACTTTTATGGTCACACCACTCCCAG                         CGTAAACACTGAATTGTATAAAATTCTGGTGAAAGAACTCGCGCATCAACT
genomic: ATCATTCTGGATGTCCCTCTTGTTTACTTTTATGGTCACACCACTCCCAGgtactttgaa ... tcccgtccagCGTAAACACTGAATTGTATAAAATTCTGGTGAAAGAACTCGCGCATCAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcttttcagttgcaaatggtgtgagcactgacaggctacttttcccgtccagCGTAAACACTGAATTGTATAAAATTCTGGTGAAAGAACTCGCGCATCAACTGGATCTACAATTTGCGTCGAACATAGCAACTCGCTCTTCTGGAATGGTT
                            cactgac  putative branch site (score: 2)
                                      ctacttttcccgtcc  putative PPT
                                       tactttt  TA-rich tract