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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttttttcttcttttgtgtctctctcaagcctttgtgattttttaatcttttgttctactttctagGTACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCCTCCTGAATTTA

Basic information

species Selaginella moellendorffii
transcript EFJ18043
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ18043 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
----------gtaagttttttttcttcttttgtgtctctctcaagcctttgtgattttttaatcttttgttctactttctagGTACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCC-TCCTGAATTTA-------------------------------------------------------------------------------------------------------------------
          ||                                                                                                     |  |  ||      ||         |   ||    | |||   |||   | |||     | | | || |                                                                                                                    
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaa-attagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT

upper sequence: EFJ18043 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: Vv12s0057g01480.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------gtaagtt-ttttttcttcttttgtgtctctctcaagcctttgtgattttttaatcttttgttctactttctagGTACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCC--TCCTGAATTTA
                             | ||| |||| ||| | ||||  |   |   |   ||||   |   |  |||   |   |   || | ||||| ||||| ||| ||| |||||| |||||||| || ||||| ||||| ||||||||||| || || ||  | ||  | || ||||  ||  | |   |||  
tatgatcactggaaattccgataatcaaaatgttattttatctgcatttgccttcttaagagaactttcatagagtcaaattgctgcataatctctgtagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTTTATAACGCTAATTTGGGGATCACAAAGAAGCCGGTGCCAGATT--

upper sequence: EFJ18043 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: PP1S2_337V6.1 (Physcomitrella patens), 3'ss of exon 4
--------------------gtaagttttttttcttcttt-tgtgtctctct----caagcctttgtgattttttaatcttttgttctactttcta---gGTACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCC---TCCTGAATTTA
                    |      |||   | || |  | || || ||      ||  |   ||   ||   ||    |  | |||  |  ||   ||| || |||||| | |||||||| |||||||| |||||||| || || || ||||||||||| || ||| ||||| | || ||||  ||   |||||| |   
atttagcgctgattaaagaagccgacctttcaacgtcatcatatgcctttcattcgtaactccaagtatcttgccaaatgctaatactaggtaatatcagGTGCAGGCCTACTTATTTGATGGCTACTGGGAAGATATTGGAACTATTGAAGCTTTTTACAACGCAAACTTAGGAATCACGAAGAAGCCCGTTCCTGATT---


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtgtctctctcaagcctttgtgattttttaatcttttgttctactttctagGTACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCCTCCTGAATTTA
                             ttttaat  putative branch site (score: 3)
                                   tcttttgttctacttt  CT-rich tract
                    tttgtgattttttaat  TA-rich tract