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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagaatactttgtttcttctttctttcgtttctcacaaaaggattgtttcttttctttccatttcgtgttctatcagGCTGCCTTGCCGCAAGGTATTGTCCCTTTCGTTTTTGCTAAAGAGTACAATGTGCATCCAGACGTCCTGAGCACTGC

Basic information

species Selaginella moellendorffii
transcript EFJ17245
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169110755|gb|FE509316.1|FE509316
EST:     CAATCGCAGCGGGGCTTCGCAATATGGATTTGAGAGCGTCGATTGTCCAG                         GCTGCCTTGCCGCAAGGTATTGTCCCTTTCGTTTTTGCTAAAGAGTACAAT
genomic: CAATCGCAGCGGGGCTTCGCAATATGGATTTGAGAGCGTCGATTGTCCAGgcaagaatac ... gttctatcagGCTGCCTTGCCGCAAGGTATTGTCCCTTTCGTTTTTGCTAAAGAGTACAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcgtttctcacaaaaggattgtttcttttctttccatttcgtgttctatcagGCTGCCTTGCCGCAAGGTATTGTCCCTTTCGTTTTTGCTAAAGAGTACAATGTGCATCCAGACGTCCTGAGCACTGC
       ttctcac  putative branch site (score: 2)
                     ttgtttcttttctttc  putative PPT
                        tttctttt  TA-rich tract