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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagttttcctcgtatacgaactcaagctttggcgcttgtagacagggaaataaaccatatctgctgattgatttctcggactgcctacaaaccagtgtgtaagttgtggtcgattttcgtgtgacttccttaacgctcagaccttgcatctctgcagATATTTGCTAGGAGCAGTTTTTCTCCAACTATGTACCCTACTGAGATTAGATCAGCATCCAATGGTTCAAAAGCCTGTGGATCCAAGTCTGTTTATCCAT

Basic information

species Selaginella moellendorffii
transcript EFJ16257
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ16257 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA16G03970.1 (Glycine max), 3'ss of exon 7
gtagagttttcctcgtatacgaactcaagctttggcgcttgtagacagggaaataaaccatatctgctgattgatttc-tcggactgcctacaaaccagtgtgtaagttgtggtcgattttcgtgtgacttccttaacgctca-gaccttgcatctctgcagATATTTGCTAGGAGCAGTTTTTCTCCAACTATGTACCCTACTGAGATTAGATCAGCATCCAATGGTTCAAAAGCCTGTGGATCCAAGTCTGTTTATCCAT
                                                         ||  || |  |  || ||||  ||  | ||  | |       | | |   ||||| |   | |   |||  |||  ||   | ||| ||  |||    | ||||| ||| ||||||||||||||||  | || || |||    |  | ||  | |   |||| ||||| |||||||||||||| ||||||||||| ||||| |||
--------------------------------------------------------cccccatattttagttcatttaatctcaatgtatccctgttttttttttttttgtgtt---tctgaatgttgctttgttcctgttcatgaatttgt---tgtgcagTTATGTGCTAGGAGCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCAAGTCTTTTTATTCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtggtcgattttcgtgtgacttccttaacgctcagaccttgcatctctgcagATATTTGCTAGGAGCAGTTTTTCTCCAACTATGTACCCTACTGAGATTAGATCAGCATCCAATGGTTCAAAAGCCTGTGGATCCAAGTCTGTTTATCCAT
                         ccttaac  putative branch site (score: 3)
                                            catctct  putative PPT
          atttt  TA-rich tract