Sequence
atgc intronic sequence ATGC exonic sequencegtagcttctcctcgattctctttctgagatgatacgtaattctcttttcagGAGTCGTGAGTTTCTTTGGCAAGAAGGCCACACCGCTTATGCAACCAAGGAAGAAGCGGATGAGGAAGTGTATGCGGTGCTTGATCTCTATCGAAGAGTG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ15689 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ15689 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA19G40930.1 (Glycine max), 3'ss of exon 6
--------------------------------------------------gtagcttctcctcgattctctttctgagatgatacgtaattctcttttcagGAGTCGTGAGTTTCTTTGGCAAGAAGGCCACACCGCTTATGCAACCAAGGAAGAAGCGGATGAGGAAGTGTATGCGGTGCTTGATCTCTATCGAAGAGTG
| | ||| || | | | | | | ||| | | || | |||||||||||| |||||||||||||||||||| ||||| |||| |||||| ||||| ||||| |||| ||
ttaatatggttttggatactgttgctgttatgtaaactaatttatattatggaactttgtctagtccattgtgtggtgctcata-gaagttttgatttcagGAGTCGCGAGTTTCTTTGGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG---------------------------------
upper sequence: EFJ15689 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA03G38340.1 (Glycine max), 3'ss of exon 6
--------------------------------------------------gtagcttctcctcgattctctttctgagatgatacgtaattctcttttcagGAGTCGTGAGTTTCTTTGGCAAGAAGGCCACACCGCTTATGCAACCAAGGAAGAAGCGGATGAGGAAGTGTATGCGGTGCTTGATCTCTATCGAAGAGTG
| | ||| | | | | | || || || | | || |||||||||||||||||||||||||||||| ||||| |||| ||| | ||||| ||||| |||| ||
ttaatatggttttggatactgttgctttcatgtaaaatagtttatattctggaactttgtcctagtccattgtgtggtgct-tatagaagtttgattgcagGAGTCGTGAGTTTCTTTGGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAG---------------------------------
upper sequence: EFJ15689 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: AT5G10880.1 (Arabidopsis thaliana), 3'ss of exon 2
--------gtagcttctcctcgattctctttctgagatgata-----cgtaattctcttttcagGAGTCGTGAGTTTCTTTGGCAAGAAGGCCACACCGCTTATGCAACCAAGGAAGAAGCGGATGAGGAAGTGTATGCGGTGCTTGATC-TCTATCGAAGAGTG---------------------------------------------------------------------------------------------
|| | | | | | || || || | || | || ||||||| |||||||| |||||||||||||| ||||| | || ||| ||||| ||||| || |||||||| ||| || || |||| | |||| | | |||
gttaaccagtgggctaatgttacgttgttagatgggagtttagcgaccctaccccatttatcaggagccgtgagttcctttggcaagaaggacacactgattttgctaccaaagaagaggctgatgaggaggtgcttg--atgtttgaacatctacagCCGCGTGTATGACTCATGGAGATGACAAAGGTTTAGTATTCCCTCCTAAAGTGGCACCTGTTCAAGTTGTTGTAATCCATGTTCCCATCAAAGGCGCTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtagcttctcctcgattctctttctgagatgatacgtaattctcttttcagGAGTCGTGAGTTTCTTTGGCAAGAAGGCCACACCGCTTATGCAACCAAGGAAGAAGCGGATGAGGAAGTGTATGCGGTGCTTGATCTCTATCGAAGAGTG
ttctcttttc CT-rich tract
taattct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagcttctcctcgattctctttctgagatgatacgtaattctcttttcagGAGTCGTGAGTTTCTTTGGCAAGAAGGCCACACCGCTTATGCAACCAAGGAAGAAGCGGATGAGGAAGTGTATGCGGTGCTTGATCTCTATCGAAGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA