1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaagtttatggcgaggtgatccgttttctttagctttaacctttgtctctttagGATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGATTTGTCCCGACGAAAGTGAAATCAATGCCGTGCATAGAAAAGGATGGACT
species | Selaginella moellendorffii |
transcript | EFJ15257 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACG GATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGATEST: gi|169103840|gb|FE508350.1|FE508350
genomic: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACGgtaaagttta ... gtctctttagGATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGAT
EST: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACG GATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGATEST: gi|169103798|gb|FE504200.1|FE504200
genomic: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACGgtaaagttta ... gtctctttagGATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGAT
EST: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACG GATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGATEST: gi|169108911|gb|FE509202.1|FE509202
genomic: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACGgtaaagttta ... gtctctttagGATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGAT
EST: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACG GATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGATEST: gi|169116462|gb|FE517487.1|FE517487
genomic: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACGgtaaagttta ... gtctctttagGATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGAT
EST: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACG GATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGATEST: gi|169052287|gb|FE462693.1|FE462693
genomic: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACGgtaaagttta ... gtctctttagGATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGAT
EST: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACG GATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGATEST: gi|169034267|gb|FE445107.1|FE445107
genomic: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACGgtaaagttta ... gtctctttagGATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGAT
EST: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACG GATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGATEST: gi|169034203|gb|FE445043.1|FE445043
genomic: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACGgtaaagttta ... gtctctttagGATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGAT
EST: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACG GATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGAT
genomic: ACTTTCTCTCGGCAAAGTCAACGATGGCTGTTTGCAATGTCCATATCACGgtaaagttta ... gtctctttagGATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGAT
taaagtttatggcgaggtgatccgttttctttagctttaacctttgtctctttagGATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGATTTGTCCCGACGAAAGTGAAATCAATGCCGTGCATAGAAAAGGATGGACT
ctttaac putative branch site (score: 37)
cctttgtctcttt CT-rich tract
ttttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtttatggcgaggtgatccgttttctttagctttaacctttgtctctttagGATGGGAGTATGCAACAAGTGGCTCCTGCGAGAAAATGCCGTCTACGAGATTTGTCCCGACGAAAGTGAAATCAATGCCGTGCATAGAAAAGGATGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA