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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcagttattttgcgcatggaagaaatagttaactaactcgttggcagGACCATTGCACGGAATTCCTTATGGTTTGAAGGACACAATTGCGGTTCCAGGGTACAGAACCACTTGGGGAAGCACAAGTTTTAAGGACCAGTTCTTCAA

Basic information

species Selaginella moellendorffii
transcript EFJ14995
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ14995 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: PP1S13_199V6.1 (Physcomitrella patens), 3'ss of exon 7
--------------------------------------------------------------------------------------------gttagcagttattttgcgc-atggaagaaatagttaac--taactcgttggcagGACCATTGCACGGAATTCCTTATGGTTTGAAGGACACAATTGCGGTTCCAGGGTACAGAACCACTTGGGGAAGCACAAGTTTTAAGGACCAGTTCTTCAA
                                                                                            | |     |  | |   ||  |       |||  |||   | |   |||  ||||||||||||||||||| || |||||  ||||||||    |||| ||||| || ||||||||||| |||||    |    ||| ||| | ||  |  ||||
gtgatctgtctttatcccatctaagaagtcccgtgcatttgatggcgaattatcagacaggcgtcactttacttctttaccgttctttgattgctgttgctggtctaaagctgtaacgtgtatatataattttgaactgtttacagGACCATTGCACGGAATACCATATGGGCTGAAGGACCTCTTTGCTGTTCCTGGCTACAGAACCACATGGGGTTCTAATCTTTTCAAGAATCAAGTAATCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagcagttattttgcgcatggaagaaatagttaactaactcgttggcagGACCATTGCACGGAATTCCTTATGGTTTGAAGGACACAATTGCGGTTCCAGGGTACAGAACCACTTGGGGAAGCACAAGTTTTAAGGACCAGTTCTTCAA
                                      aactaac  putative branch site (score: 1)
                                  aaatagttaactaa  TA-rich tract