1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatttgatatttccttgtacgtacgtgtcatcgaaattttgatgttccgttttcagGGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGCTACGCTGTTTTTGGTCTAGGAAACAGGCAATATGAGCACTTCAACAAG
species | Selaginella moellendorffii |
transcript | EFJ14342 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGAGAACCGACGGATAATGCTGCTCGCTTTTACAAATGGTTTGTCGAG GGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGCTACGCTGTTTTTGGTEST: gi|169111964|gb|FE510668.1|FE510668
genomic: ATGGAGAACCGACGGATAATGCTGCTCGCTTTTACAAATGGTTTGTCGAGgtatttgata ... ccgttttcagGGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGCTACGCTGTTTTTGGT
EST: ATGGAGAACCGACGGATAATGCTGCTCGCTTTTACAAATGGTTTGTCGAG GGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGTTACGCGGTTTTTGGTEST: gi|169025173|gb|FE434110.1|FE434110
genomic: ATGGAGAACCGACGGATAATGCTGCTCGCTTTTACAAATGGTTTGTCGAGgtatttgata ... ccgttttcagGGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGCTACGCTGTTTTTGGT
EST: ATGGAGAACCGACGGATAATGCTGCTCGCTTTTACAAATGGTTTGTCGAG GGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGTTACGCGGTTTTTGGTEST: gi|169114245|gb|FE515780.1|FE515780
genomic: ATGGAGAACCGACGGATAATGCTGCTCGCTTTTACAAATGGTTTGTCGAGgtatttgata ... ccgttttcagGGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGCTACGCTGTTTTTGGT
EST: ATGGAGAACCGACGGATAATGCTGCTCGCTTTTACAAATGGTTTGTCGAG GGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGTTACGCGGTTTTTGGTEST: gi|169078171|gb|FE488826.1|FE488826
genomic: ATGGAGAACCGACGGATAATGCTGCTCGCTTTTACAAATGGTTTGTCGAGgtatttgata ... ccgttttcagGGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGCTACGCTGTTTTTGGT
EST: ATAATGCTGCTCGCTTTTACAAATGGTTTGTCGAG GGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGCTACGCTGTTTTTGGTEST: gi|169025078|gb|FE433859.1|FE433859
genomic: ATAATGCTGCTCGCTTTTACAAATGGTTTGTCGAGgtatttgata ... ccgttttcagGGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGCTACGCTGTTTTTGGT
EST: ATGGAGAACCGACGGATAATGCTGCTCGCTTTTACAAATGGTTTGTCGAG GGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGCTACGCTGTTTTTGGT
genomic: ATGGAGAACCGACGGATAATGCTGCTCGCTTTTACAAATGGTTTGTCGAGgtatttgata ... ccgttttcagGGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGCTACGCTGTTTTTGGT
atttgatatttccttgtacgtacgtgtcatcgaaattttgatgttccgttttcagGGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGCTACGCTGTTTTTGGTCTAGGAAACAGGCAATATGAGCACTTCAACAAG
ttttgat putative branch site (score: 9)
ttccgttttc CT-rich tract
aaattttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgatatttccttgtacgtacgtgtcatcgaaattttgatgttccgttttcagGGGGAAGAGAAAGAACCGTGGCTGGGAAACTTAAGCTACGCTGTTTTTGGTCTAGGAAACAGGCAATATGAGCACTTCAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT