1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtttatggtccttcggtagagattgttctgaaaaatgtcatctccagATTCCAGGACTGGTGAACGTAGATTTCGCAGACGTGAAAGCGATTATGGCAAACTCAGGGACCGCCATGCTTGGAGTCGGGACTGCTAGCGGCAAAAACC
species | Selaginella moellendorffii |
transcript | EFJ14098 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGGGTGTGCAGGGCATCTCGGACATTATCACT ATTCCAGGACTGGTGAACGTAGATTTCGCAGACGTGAAAGCGATCATGACAEST: gi|169041214|gb|FE448668.1|FE448668
genomic: CAGGGTGTGCAGGGCATCTCGGACATTATCACTgtaagtttat ... tcatctccagATTCCAGGACTGGTGAACGTAGATTTCGCAGACGTGAAAGCGATTATGGCA
EST: CGGACGATGTTCTTAGGCAGGGTGTGCAGGGCATCTCGGACATTATCACT ATTCCAGGACTGGTGAACGTAGATTTCGCAGACGTGAAAGCGATTATGGCAEST: gi|169041215|gb|FE448669.1|FE448669
genomic: CGGACGATGTTCTTAGGCAGGGTGTGCAGGGCATCTCGGACATTATCACTgtaagtttat ... tcatctccagATTCCAGGACTGGTGAACGTAGATTTCGCAGACGTGAAAGCGATTATGGCA
EST: CGGACGATGTTCTTAGGCAGGGTGTGCAGGGCATCTCGGACATTATCACT ATTCCAGGACTGGTGAACGTAGATTTCGCAGACGTGAAAGCGATTATGGCAEST: gi|169063875|gb|FE471230.1|FE471230
genomic: CGGACGATGTTCTTAGGCAGGGTGTGCAGGGCATCTCGGACATTATCACTgtaagtttat ... tcatctccagATTCCAGGACTGGTGAACGTAGATTTCGCAGACGTGAAAGCGATTATGGCA
EST: CGGACGATGTTCTTAGGCAGGGTGTGCAGGGCATCTCGGACATTATCACT ATTCCAGGACTGGTGAACGTAGATTTCGCAGACGTGAAAGCGATCATGACA
genomic: CGGACGATGTTCTTAGGCAGGGTGTGCAGGGCATCTCGGACATTATCACTgtaagtttat ... tcatctccagATTCCAGGACTGGTGAACGTAGATTTCGCAGACGTGAAAGCGATTATGGCA
gtaagtttatggtccttcggtagagattgttctgaaaaatgtcatctccagATTCCAGGACTGGTGAACGTAGATTTCGCAGACGTGAAAGCGATTATGGCAAACTCAGGGACCGCCATGCTTGGAGTCGGGACTGCTAGCGGCAAAAACC
tcatctcc CT-rich tract
taagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttatggtccttcggtagagattgttctgaaaaatgtcatctccagATTCCAGGACTGGTGAACGTAGATTTCGCAGACGTGAAAGCGATTATGGCAAACTCAGGGACCGCCATGCTTGGAGTCGGGACTGCTAGCGGCAAAAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG