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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttcgatcatggagctaaaccggtgaccagcacgtcaattgcagGTTTATGCTGAAGGCACTGCTCGTCCCAGCGGCGGTGCTGGTGCGGTTGCCATGCTTGTAGGACCGAACGCGCCGCTTGTTCTCGAACGAAGCTATACCG

Basic information

species Selaginella moellendorffii
transcript EFJ13836
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ13836 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA16G32480.1 (Glycine max), 3'ss of exon 4
-------------------------------------------gtaagttttcgatcatggagctaaaccggtgacc-agc-acgtca-----attgcagGTTTATGCTGAAGGCACTGCTCGTCCCAGCGGCGGTGCTGGTGCGGTTGCCATGCTTGTAGGACCGAACGCGCCGCTTGTTCTCGAACGAAGCTATACCG
                                            | | || | ||| || | |  |||| | |  |  ||| | |||       || ||||| |||||||||||  ||||||||||||  || || |||| |||  |||||||||||||||| ||  | || ||  ||| | | ||| | |     |  |
tgactactattatacttatgttcctttctcttaaaacgttgaaatcaattgtagattatagtgtcaaacagttttcttagctatgtctttcttgtttcagGTATATGCTGAAGGACCTGCTCGTCCCACTGGAGGAGCTGCTGCAATTGCCATGCTTGTAGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagttttcgatcatggagctaaaccggtgaccagcacgtcaattgcagGTTTATGCTGAAGGCACTGCTCGTCCCAGCGGCGGTGCTGGTGCGGTTGCCATGCTTGTAGGACCGAACGCGCCGCTTGTTCTCGAACGAAGCTATACCG
                       agctaaa  putative branch site (score: 3)
           taagtttt  TA-rich tract