1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagttggcttgggcaagcgagcgagcgcatcccccgtcccgtgtactcaccgcactctctgtcagGTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCCAAGAATCCATCCGGCAAGATCCTTCGCAAGGAGCTCAGAAGTAGACTTT
species | Selaginella moellendorffii |
transcript | EFJ13708 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAG GTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTGGATTCCATCCCCEST: gi|169043104|gb|FE454018.1|FE454018
genomic: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAGgtgagttggc ... tctctgtcagGTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCC
EST: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAG GTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCCEST: gi|169054476|gb|FE460285.1|FE460285
genomic: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAGgtgagttggc ... tctctgtcagGTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCC
EST: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAG GTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCCEST: gi|169082027|gb|FE487484.1|FE487484
genomic: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAGgtgagttggc ... tctctgtcagGTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCC
EST: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAG GTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCCEST: gi|169043103|gb|FE454017.1|FE454017
genomic: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAGgtgagttggc ... tctctgtcagGTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCC
EST: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAG GTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCCEST: gi|169069209|gb|FE480007.1|FE480007
genomic: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAGgtgagttggc ... tctctgtcagGTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCC
EST: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAG GTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCCEST: gi|169096944|gb|FE497074.1|FE497074
genomic: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAGgtgagttggc ... tctctgtcagGTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCC
EST: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAG GTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCCEST: gi|169082028|gb|FE487485.1|FE487485
genomic: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAGgtgagttggc ... tctctgtcagGTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCC
EST: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAG GTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCCEST: gi|169075419|gb|FE483053.1|FE483053
genomic: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAGgtgagttggc ... tctctgtcagGTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCC
EST: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAG GTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCC
genomic: CCGACTCTCACATCTCAGAGGACGACATCAAGGGCTTCGTCTCCAAGCAGgtgagttggc ... tctctgtcagGTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCC
gggcaagcgagcgagcgcatcccccgtcccgtgtactcaccgcactctctgtcagGTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCCAAGAATCCATCCGGCAAGATCCTTCGCAAGGAGCTCAGAAGTAGACTTT
tactcac putative branch site (score: 8)
ctctctgtc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttggcttgggcaagcgagcgagcgcatcccccgtcccgtgtactcaccgcactctctgtcagGTTGTGTTCTACAAGAAGATACATTCCGTCTACTTCGTCGATTCCATCCCCAAGAATCCATCCGGCAAGATCCTTCGCAAGGAGCTCAGAAGTAGACTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT