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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttcgatcatggagctaaaccggtgacctgcatgtcaattgcagGTTTATGCTGAAGGCGCTGCTCGTCCCAGCGGCGGTGCTGGTGCAGTTGCCATGCTTGTAGGACCGAACGCGCCGCTTGTTCTTGATCGAAGCTATACCG

Basic information

species Selaginella moellendorffii
transcript EFJ12678
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ12678 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA16G32480.1 (Glycine max), 3'ss of exon 4
-------------------------------------------gtaagttttcgatcatggagctaaaccggtgacctg--catgtca-----attgcagGTTTATGCTGAAGGCGCTGCTCGTCCCAGCGGCGGTGCTGGTGCAGTTGCCATGCTTGTAGGACCGAACGCGCCGCTTGTTCTTGATCGAAGCTATACCG
                                            | | || | ||| || | |  |||| | |  | |    |||||       || ||||| |||||||||||  ||||||||||||  || || |||| |||| |||||||||||||||| ||  | || ||  ||| | ||||  | |     |  |
tgactactattatacttatgttcctttctcttaaaacgttgaaatcaattgtagattatagtgtcaaacagttttcttagctatgtctttcttgtttcagGTATATGCTGAAGGACCTGCTCGTCCCACTGGAGGAGCTGCTGCAATTGCCATGCTTGTAGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAG

upper sequence: EFJ12678 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA09G27380.1 (Glycine max), 3'ss of exon 4
--------------------------------------------gtaagttttcgatcatggagctaaaccggtgacc---tgcatgtcaattg---cagGTTTATGCTGAAGGCGCTGCTCGTCCCAGCGGCGGTGCTGGTGCAGTTGCCATGCTTGTAGGACCGAACGCGCCGCTTGTTCTTGATCGAAGCTATACCG
                                            | |  || |  |   |  | | |      |  |     || | | | |||   ||||| |||||||||||  ||||||||||||  || || || | |||| |||||||||||||||| ||  | || ||  ||| | ||||  | |     |  |
acttatgttcctttctcttcaaatgttgaaaccaattgcagaatgcagattatatagtgtcaaacaattttcatagctatgagcctatgacttgtttcagGTATATGCTGAAGGACCTGCTCGTCCCACTGGAGGAGCAGCTGCAATTGCCATGCTTGTAGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagttttcgatcatggagctaaaccggtgacctgcatgtcaattgcagGTTTATGCTGAAGGCGCTGCTCGTCCCAGCGGCGGTGCTGGTGCAGTTGCCATGCTTGTAGGACCGAACGCGCCGCTTGTTCTTGATCGAAGCTATACCG
                       agctaaa  putative branch site (score: 3)
           taagtttt  TA-rich tract