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gtaaaaatggctctctcgttcttttctactatgtgataaagcttctaaaattcagAGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGTGGATTCAGG
species | Selaginella moellendorffii |
transcript | EFJ12438 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGGAGATGGTACAACGTCTGTAGTTATTATTGCCGCAGAGCTCTTGAAG AGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGTEST: gi|169076304|gb|FE485750.1|FE485750
genomic: TTGGAGATGGCACAACGTCTGTAGTTATTATTGCGGCAGAGCTCTTGAAGgtaaaaatgg ... taaaattcagAGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGT
EST: ATTATTGCCGCAGAGCTCTTGAAG AGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGTEST: gi|169113411|gb|FE514738.1|FE514738
genomic: ATTATTGCGGCAGAGCTCTTGAAGgtaaaaatgg ... taaaattcagAGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGT
EST: TTGGAGATGGCACAACGTCTGTAGTTATTATTGCGGCAGAGCTCTTGAAG AGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGTEST: gi|169065292|gb|FE473193.1|FE473193
genomic: TTGGAGATGGCACAACGTCTGTAGTTATTATTGCGGCAGAGCTCTTGAAGgtaaaaatgg ... taaaattcagAGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGT
EST: TTGGAGATGGTACAACGTCTGTAGTTATTATTGCCGCAGAGCTCTTGAAG AGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGTEST: gi|169042176|gb|FE454219.1|FE454219
genomic: TTGGAGATGGCACAACGTCTGTAGTTATTATTGCGGCAGAGCTCTTGAAGgtaaaaatgg ... taaaattcagAGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGT
EST: TTGGAGATGGCACAACGTCTGTAGTTATTATTGCGGCAGAGCTCTTGAAG AGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGT
genomic: TTGGAGATGGCACAACGTCTGTAGTTATTATTGCGGCAGAGCTCTTGAAGgtaaaaatgg ... taaaattcagAGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGT
gtaaaaatggctctctcgttcttttctactatgtgataaagcttctaaaattcagAGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGTGGATTCAGG
ttctaaa putative branch site (score: 18)
cttct CT-rich tract
ttctaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaatggctctctcgttcttttctactatgtgataaagcttctaaaattcagAGGGCCAACGATTTAGTTCGGAACAAAATCCATCCTACTTCTATCATTAGTGGATTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA