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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatagaagcatttcttgtagctttgaaaatattgcatatcagGGCCTGGGCATCACCATCTTCGGGATGGCCTACATGTTTGTTCACGACGGCCTGGTGCACCAACGGTTTTCAGTTGGCCCACTGGCCGATGTGCCATATT

Basic information

species Selaginella moellendorffii
transcript EFJ11878
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ11878 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: EDO99380 (Chlamydomonas reinhardtii), 3'ss of exon 4
--------------------------------------------------------------------------gtaagtaatagaagcatttcttgtagctttgaaaatattgcat--atcagGGCCTGGGCATCACCATCTTCGGGATGGCCTACATGTTTGTTCACGACGGCCTGGTGCACCAACGGTTTTCAGTTGGCCCACTGGCCGATGTGCCATATT
                                                                                |    || |         || |  |       ||| |      ||| |||||||||||  | ||||| || |||||||||||  | |||||||||||||||||||  || ||  | || |                        
tcatactacgcgtgctccatctcgggcggggcggtggcatcccattcttcccatttcccaccactacctgcctacctcccatcccaaacccccaacccagATCGGCGGCGTGTGCTTCGGCGCGGGTCTGGGCATCACGCTGTTCGGCATCGCCTACATGTTCTTCCACGACGGCCTGGTGCACCGCCGCTTCCCCGTGG------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtaatagaagcatttcttgtagctttgaaaatattgcatatcagGGCCTGGGCATCACCATCTTCGGGATGGCCTACATGTTTGTTCACGACGGCCTGGTGCACCAACGGTTTTCAGTTGGCCCACTGGCCGATGTGCCATATT
                                                   aaaatattgcatat  TA-rich tract