Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttcaatacaacttttctttatcttaccttgaaccaacgacaatgctgacactttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG

Basic information

species Selaginella moellendorffii
transcript EFJ11728
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G127948_T04 (Zea mays), 3'ss of exon 6
---------------------------gtaagctttca---atacaacttttctttatcttaccttgaaccaacga--caatg-ctgacactttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG------------------------------------------------
                           ||     |||    |||    |    |  |  ||  | |||     ||   |  || ||| |    ||  ||||||||  ||| || ||  ||||||||||| |||| ||||| || ||||||||||| ||| | ||||||||| || || || |     |||| ||  | || |                                                
gtacgaaatggccaggccgccagatctgtgcttcttcgcctatatcgatcgagtagaagttgacatgacatctcggacccgtgtctgtctgcatctgcgcaggagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacaagGACAACTACCTCAACTACCACGAGCGGCTGCTGAAGCTGGTGAAGCTGGGCGGCCTCATCGGCTACGACAACACGCTGTGGAACGGCTCCGTCGTGCTCC

upper sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G127948_T02 (Zea mays), 3'ss of exon 5
---------------------------gtaagctttca---atacaacttttctttatcttaccttgaaccaacga--caatg-ctgacactttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG
                           ||     |||    |||    |    |  |  ||  | |||     ||   |  || ||| |    ||  ||||||||  ||| || ||  ||||||||||| |||| ||||| || ||||||||||| ||| | ||||||||| || || || |     |||| ||  | || |
gtacgaaatggccaggccgccagatctgtgcttcttcgcctatatcgatcgagtagaagttgacatgacatctcggacccgtgtctgtctgcatctgcgcagGAGAAGAACCACGGGTCGTTCGACTTCGTCTTCGTGGACGCCGACAAGGACAACTACCTCAACTACCACGAGCGGCTGCTGAAGCTGGTGAAGCTGGGCG

upper sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA01G39460.1 (Glycine max), 3'ss of exon 4
---------gtaagctttcaatacaacttttctttatctta----ccttgaaccaacgacaatgctgacactttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG
         || |        || |  | |  || || |||    | |  ||  || | |  || |   | |      ||||||   |||| | || || ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||     | || ||  | || |
gtgcgttcagtgattccatcttatatgtgtatttaatgttattagcttgaaattaatggctttgattg-attcattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTGATTGAGCTTGTGAAGCTTGGGG

upper sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA11G05800.2 (Glycine max), 3'ss of exon 4
-----------------------------gtaagctttc---aatacaacttt-----tctttatcttaccttgaaccaacgacaatgctg---acactttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG
                              | | ||||    | ||| |  ||     | ||||| ||| ||||||  ||    |||  ||    || |     |||||||   |||| | || |||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||     | || || || || |
gtgcgttcaattaatcatcccattttattattaactttttttagtacgaaattatgtatatttatgttagcttgaaataaaattaatattgtacgcattgcatgcgcagGAAAAGAATAAGGGAGCGTTCGATTTCATCTATGTGGATGCTGATAAGGACAACTACTTGAACTACCACAAGAGGGTGATTGAGCTTGTGAAGGTTGGGG

upper sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA07G33780.2 (Glycine max), 3'ss of exon 4
---------------------gtaagctttcaatacaacttttctt-------tatcttaccttgaaccaacgacaatgctgacactttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG---
                        ||  || || | ||      ||       ||    |   | |          ||  ||     |     |||||||  ||| |||||    |  |||||||||||||| ||||| ||||||||||| ||| | ||||||||||||||||||||     | || ||||| || |   
tctatgagagactaaaaatatactagtatttaaaaaaaaaacaattggaggagtaaaaaagggtaattgggtagtgattgtgtgtggtgaaatgcaggagAAGAACCATGGAAGCTATGACTTCATCTTTGTTGATGCGGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTAAAAGTTGGGGGCG

upper sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA07G33780.1 (Glycine max), 3'ss of exon 4
------------------------gtaagctttcaatacaacttttctt-------tatcttaccttgaaccaacgacaatgctgacactttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG
                           ||  || || | ||      ||       ||    |   | |          ||  ||     |     |||||||  ||| |||||    |  |||||||||||||| ||||| ||||||||||| ||| | ||||||||||||||||||||     | || ||||| || |
aattctatgagagactaaaaatatactagtatttaaaaaaaaaacaattggaggagtaaaaaagggtaattgggtagtgattgtgtgtggtgaaatgcagGAGAAGAACCATGGAAGCTATGACTTCATCTTTGTTGATGCGGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTAAAAGTTGGGG

upper sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA02G11530.1 (Glycine max), 3'ss of exon 4
-------------------gtaagctttcaatacaacttt-tctttatcttaccttgaaccaacgacaat--gctgacactttcct---------cgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG
                      | |  |||||| ||  |  ||  | |       | ||   | |  |||  | |  |  || | |          |||||||  ||| |||||    |  ||||||||||||||||| || ||||||||||| ||| | ||||||||||||||||||||     | || ||||| || |
taaaaaaaatgcaagtttttccatcactcaataaaaaataatcaatttagaggagtaaaaagagggtaattgggtagcgattgcgtgtggtgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGG

upper sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA17G18800.1 (Glycine max), 3'ss of exon 4
--------------------------gtaagctttcaatacaacttttcttta--tcttaccttgaaccaacgacaatgctgacactttc---ctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG
                            |||  || | |  ||  || |||||  | |||  || ||  ||   ||      ||  | ||    | ||||||    ||  | ||  |||| || ||| | || ||||||||||| |||||||||||||||||||||||||||||| |  |     | || ||  | ||||
tgtttcttgaaaaaaaaaacttatataaaagtatttattttaaaattactttaaattttaaatttaaataaactcaccctaaactatgtcaattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTACTAGAGCTTGTGAAGATTGGAG

upper sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: Vv03s0063g00140.t01 (Vitis vinifera), 3'ss of exon 4
gtaagctttc----aatacaacttttctttatcttaccttgaaccaacgacaat--------gctgac--actttcctc------------gcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG
||||||||      ||  || | |      ||  ||  |  | ||||  |  ||        ||| |   |||||  |              |||| |  | |||| ||  ||||||||||||| || ||||| || ||||||||||||||  |||||||||||||||| ||||||  |||||| || || || |
gtaagcttcacaaaaacccatcatccaaacattgtatttaaatccaaacatgattgaaacaagctaattgactttgtttctgtgatgaaaaacagGGGAAGTATCACGGGTCGTTCGACTTCATATTCGTGGACGCAGACAAGGACAATTATCTGAACTACCACAAGAGATTGATCGATTTGGTGAAGGTGGGGG

upper sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: Vv07s0031g00350.t01 (Vitis vinifera), 3'ss of exon 4
------------gtaagctt---tcaatacaac-ttttctttatcttaccttgaaccaacgacaatgctgacactttc-----ctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG
             |   | |    || | |||  || ||  |  || | ||  |   ||    |||    | | | ||      | |||||    | |||||||  | ||||| || || || ||||| |||||||||||||| ||| ||||||||||||| ||| ||||   | |||| || || ||||
gtaagtacaataatgcccctagcccactccaatattctccatgcctcatctgaacagaattgtaatttcaaaattatcaccaaattgcagGGAAAGTATCATGGGACATTCGATTTTATTTTCGTGGACGCTGACAAGGACAACTACCTGAACTACCACAAAAGGCTGATTGATCTGGTCAAGGTTGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169106716|gb|FE506753.1|FE506753
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169066692|gb|FE475448.1|FE475448
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169106715|gb|FE506752.1|FE506752
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169075572|gb|FE481958.1|FE481958
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169059287|gb|FE467468.1|FE467468
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|70670609|gb|DN839186.1|DN839186
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCATTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169039904|gb|FE447590.1|FE447590
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169108255|gb|FE513564.1|FE513564
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGAC
EST: gi|169107108|gb|FE507262.1|FE507262
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169042315|gb|FE452863.1|FE452863
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169070774|gb|FE477321.1|FE477321
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169065676|gb|FE474344.1|FE474344
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCATTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169115443|gb|FE516184.1|FE516184
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169113850|gb|FE515385.1|FE515385
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGGGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169075571|gb|FE481957.1|FE481957
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169107109|gb|FE507263.1|FE507263
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169036115|gb|FE444622.1|FE444622
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169104300|gb|FE503714.1|FE503714
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169115444|gb|FE516185.1|FE516185
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169104299|gb|FE503713.1|FE503713
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
EST: gi|169070773|gb|FE477320.1|FE477320
EST:     ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGAC                         GAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC
genomic: ATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 218

TGAGCTCGGCTACCCGTACATGGTGGAAGCCGGCGTGGCTCACAAGATCGATTTCAGGGAAGGACCCGCCCTCGCAGCTCTGGACGAGATGCTCAAAGACgtaagctttc ... ttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacttttctttatcttaccttgaaccaacgacaatgctgacactttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG
                                   tgctgac  putative branch site (score: 218)
                                         cactttcctc  CT-rich tract
     tttctttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagctttcaatacaacttttctttatcttaccttgaaccaacgacaatgctgacactttcctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG