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gtaatcgaaaacaaaaatgtcgagtttcaattcaaacctttgggccattttcttttttccagATCTACAAAGTTCCTGCAACCGATGTAGAGGCTATCAAGTCTACGCTTATGGGCATTTTTGAAAAGAGGAGAGCGCGGAAATTTTTCATCTATGTGCAGG
species | Selaginella moellendorffii |
transcript | EFJ11673 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAG ATCTACAAGGTTCCTGCGACCGATGTAGAGGCTATCAAGTCTACGCTTATGEST: gi|169024779|gb|FE435471.1|FE435471
genomic: ACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAGgtaatcgaaa ... ttttttccagATCTACAAAGTTCCTGCAACCGATGTAGAGGCTATCAAGTCTACGCTTATG
EST: ACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAG ATCTACAAAGTTCCTGCAACCGATGTAGAGGCTATCAAGTCTACGCTTATGEST: gi|169038310|gb|FE445309.1|FE445309
genomic: ACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAGgtaatcgaaa ... ttttttccagATCTACAAAGTTCCTGCAACCGATGTAGAGGCTATCAAGTCTACGCTTATG
EST: ACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAG ATCTACAAGGTTCCTGCGACCGATGTAGAGGCTATCAAGTCTACGCTTATGEST: gi|169070711|gb|FE477310.1|FE477310
genomic: ACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAGgtaatcgaaa ... ttttttccagATCTACAAAGTTCCTGCAACCGATGTAGAGGCTATCAAGTCTACGCTTATG
EST: ACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAG ATCTACAAGGTTCCTGCGACCGATGTAGAGGCTATCAAGTCTACGCTTATGEST: gi|169093397|gb|FE492701.1|FE492701
genomic: ACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAGgtaatcgaaa ... ttttttccagATCTACAAAGTTCCTGCAACCGATGTAGAGGCTATCAAGTCTACGCTTATG
EST: ACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAG ATCTACAAAGTTCCTGCAACCGATGTAGAGGCTATCAAGTCTACGCTTATGEST: gi|169092638|gb|FE493658.1|FE493658
genomic: ACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAGgtaatcgaaa ... ttttttccagATCTACAAAGTTCCTGCAACCGATGTAGAGGCTATCAAGTCTACGCTTATG
EST: ACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAG ATCTACAAGGTTCCTGCGACCGATGTAGAGGCTATCAAGTCTACGCTTATG
genomic: ACTTGGCTTTCAAAGCCGTAGATGGAAGCTTTGTGTATACCAAAGGGAAGgtaatcgaaa ... ttttttccagATCTACAAAGTTCCTGCAACCGATGTAGAGGCTATCAAGTCTACGCTTATG
aaaacaaaaatgtcgagtttcaattcaaacctttgggccattttcttttttccagATCTACAAAGTTCCTGCAACCGATGTAGAGGCTATCAAGTCTACGCTTATGGGCATTTTTGAAAAGAGGAGAGCGCGGAAATTTTTCATCTATGTGCAGG
ccattttcttttttcc CT-rich tract
attttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcgaaaacaaaaatgtcgagtttcaattcaaacctttgggccattttcttttttccagATCTACAAAGTTCCTGCAACCGATGTAGAGGCTATCAAGTCTACGCTTATGGGCATTTTTGAAAAGAGGAGAGCGCGGAAATTTTTCATCTATGTGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA