1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacgtgtactttgtcgccggcgtgtttaaaactcacttaatttgaactggcacagATAAACAGAGTGGAGTATGTGCACTCAAAGAGCTTTTTGCACCGGGATATTAAGCCAGATAACTTTCTTATGGGTCTTGGAAGGCGCGCAAATCAG
species | Selaginella moellendorffii |
transcript | EFJ10942 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTAACCGTAAGTTCTCGCTGAAGACCGTGCTCATGCTTGCGGATCAACTG ATAAACAGAGTGGAGTATGTGCACTCAAAGAGCTTTTTGCACCGGGATATTEST: gi|169023615|gb|FE430603.1|FE430603
genomic: GTAACCGTAAGTTCTCGCTGAAGACCGTGCTCATGCTTGCGGATCAACTGgtacgtgtac ... actggcacagATAAACAGAGTGGAGTATGTGCACTCAAAGAGCTTTTTGCACCGGGATATT
EST: GTAACCGTAAGTTCTCGCTGAAGACCGTGCTCATGCTTGCGGATCAACTG ATAAACAGAGTGGAGTATGTGCACTCAAAGAGCTTTTTGCACCGGGATATTEST: gi|169110813|gb|FE513677.1|FE513677
genomic: GTAACCGTAAGTTCTCGCTGAAGACCGTGCTCATGCTTGCGGATCAACTGgtacgtgtac ... actggcacagATAAACAGAGTGGAGTATGTGCACTCAAAGAGCTTTTTGCACCGGGATATT
EST: GTAACCGTAAGTTCTCGCTGAAGACCGTGCTCATGCTTGCGGATCAACTG ATAAACAGAGTGGAGTATGTGCACTCAAAGAGCTTTTTGCACCGGGATATT
genomic: GTAACCGTAAGTTCTCGCTGAAGACCGTGCTCATGCTTGCGGATCAACTGgtacgtgtac ... actggcacagATAAACAGAGTGGAGTATGTGCACTCAAAGAGCTTTTTGCACCGGGATATT
tacgtgtactttgtcgccggcgtgtttaaaactcacttaatttgaactggcacagATAAACAGAGTGGAGTATGTGCACTCAAAGAGCTTTTTGCACCGGGATATTAAGCCAGATAACTTTCTTATGGGTCTTGGAAGGCGCGCAAATCAG
ttaatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgtactttgtcgccggcgtgtttaaaactcacttaatttgaactggcacagATAAACAGAGTGGAGTATGTGCACTCAAAGAGCTTTTTGCACCGGGATATTAAGCCAGATAACTTTCTTATGGGTCTTGGAAGGCGCGCAAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG