1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgtttcgccatagccatacatggtaaccatggttttacatggtttctttagttttcgtgctttgaaagcttgctagatttttcgcacctttgcgtgcctccaaatctagaactttctaaccgccgcgtttactcttctacagGAGATGTAGACTCGCGCGTTTCTACAGTAGAGCTCTTCTTCATTGACACAGTTCCATTCATTGACCAGTATTGGGCGCCAAACCAGAAGCACGACTTTGA
species | Selaginella moellendorffii |
transcript | EFJ10876 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGTGAGAGACGCACAACTTATCTTTGATATGAGCCCATCTCTTTTCCGAG GAGATGTAGACTCGCGCGTTTCTACAGTAGAGCTCTTCTTCATTGACACAGEST: gi|169056542|gb|FE464950.1|FE464950
genomic: CGTGAGAGACGCACAACTTATCTTTGATATGAGCCCATCTCTTTTCCGAGgtttgtttcg ... tcttctacagGAGATGTAGACTCGCGCGTTTCTACAGTAGAGCTCTTCTTCATTGACACAG
EST: CGTGAGAGACGCACAACTTATCTTTGATATGAGCCCATCTCTTTTCCGAG GAGATGTAGACTCGCGCGTTTCTACAGTAGAGCTCTTCTTCATTGACACAGEST: gi|169056543|gb|FE464951.1|FE464951
genomic: CGTGAGAGACGCACAACTTATCTTTGATATGAGCCCATCTCTTTTCCGAGgtttgtttcg ... tcttctacagGAGATGTAGACTCGCGCGTTTCTACAGTAGAGCTCTTCTTCATTGACACAG
EST: CGTGAGAGACGCACAACTTATCTNTGATATGAGCCCATCTCTTTTCCGAG GAGATGTAGACTCGCGCGTTTCTACAGTAGAGCTCTTCTTCATTGACACAG
genomic: CGTGAGAGACGCACAACTTATCTTTGATATGAGCCCATCTCTTTTCCGAGgtttgtttcg ... tcttctacagGAGATGTAGACTCGCGCGTTTCTACAGTAGAGCTCTTCTTCATTGACACAG
ctttgcgtgcctccaaatctagaactttctaaccgccgcgtttactcttctacagGAGATGTAGACTCGCGCGTTTCTACAGTAGAGCTCTTCTTCATTGACACAGTTCCATTCATTGACCAGTATTGGGCGCCAAACCAGAAGCACGACTTTGA
ttctaac putative branch site (score: 4)
tttactcttct putative PPT
aaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttcgccatagccatacatggtaaccatggttttacatggtttctttagttttcgtgctttgaaagcttgctagatttttcgcacctttgcgtgcctccaaatctagaactttctaaccgccgcgtttactcttctacagGAGATGTAGACTCGCGCGTTTCTACAGTAGAGCTCTTCTTCATTGACACAGTTCCATTCATTGACCAGTATTGGGCGCCAAACCAGAAGCACGACTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC