1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagctttttatggtgtaatatgcagcaacctttttgtctttggacagGTTATAAATCAACTTTGAGAAACAGCGTCCGATCGCGTGCCTGGGGCGCTGCCAGCGGCTGCAGCTACAGTATCGAGCGTTGCCGTATTGTGAAG
species | Selaginella moellendorffii |
transcript | EFJ10097 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGCATTTCAGAAATTCGAGCAACGCTGCGCGTCCTTCCTCCACAAAACG GCTATAAATCAACTTTGAGAAACAGCGTCCGATCGCGTGCCTGGGGCGCTGEST: gi|169018871|gb|FE427056.1|FE427056
genomic: TTGCATTTCAGAAATTCGAGCAACGCTGCGCGTCCTTCCTCCACAAAACGgtgagctttt ... ctttggacagGTTATAAATCAACTTTGAGAAACAGCGTCCGATCGCGTGCCTGGGGCGCTG
EST: TTGCATTTCAGAAATTCGAGCAACGCTGCGCGTCCTTCCTCCACAAAACG GCTATAAATCAACTTTGAGAAACAGCGTCCGATCGCGTGCCTGGGGCGCTG
genomic: TTGCATTTCAGAAATTCGAGCAACGCTGCGCGTCCTTCCTCCACAAAACGgtgagctttt ... ctttggacagGTTATAAATCAACTTTGAGAAACAGCGTCCGATCGCGTGCCTGGGGCGCTG
gtgagctttttatggtgtaatatgcagcaacctttttgtctttggacagGTTATAAATCAACTTTGAGAAACAGCGTCCGATCGCGTGCCTGGGGCGCTGCCAGCGGCTGCAGCTACAGTATCGAGCGTTGCCGTATTGTGAAG
cctttttgtcttt CT-rich tract
tttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctttttatggtgtaatatgcagcaacctttttgtctttggacagGTTATAAATCAACTTTGAGAAACAGCGTCCGATCGCGTGCCTGGGGCGCTGCCAGCGGCTGCAGCTACAGTATCGAGCGTTGCCGTATTGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT