1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagcttcaaaatcagactttttgtcgttcagcctctctgatcctgcttgtttcttgcagCTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTATGGAGATATCATCAGTGATCTCTGCGCTGGTCTCATAGGCGGCCTTGGAT
species | Selaginella moellendorffii |
transcript | EFJ09610 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCCGAAATCGTTTACGAGGAAGTGATTATCGACAATTGCTGCATGATG CTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTATEST: gi|169058457|gb|FE466354.1|FE466354
genomic: ATCCCGAAATCGTTTACGAGGAAGTGATTATCGACAATTGCTGCATGATGgtaagcttca ... tttcttgcagCTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTAT
EST: ATCCCGAAATCGTTTACGAGGAAGTGATTATCGACAATTGCTGCATGATG CTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTATEST: gi|169020397|gb|FE431644.1|FE431644
genomic: ATCCCGAAATCGTTTACGAGGAAGTGATTATCGACAATTGCTGCATGATGgtaagcttca ... tttcttgcagCTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTAT
EST: ATCCCGAAATCGTTTACGAGGAAGTGATTATCGACAATTGCTGCATGATG CTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTATEST: gi|70670000|gb|DN838577.1|DN838577
genomic: ATCCCGAAATCGTTTACGAGGAAGTGATTATCGACAATTGCTGCATGATGgtaagcttca ... tttcttgcagCTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTAT
EST: ATCCCGAAATCGTTTACGAGGAAGTGATTATCGACAATTGCTGCATGATG CTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTATEST: gi|169058456|gb|FE466353.1|FE466353
genomic: ATCCCGAAATCGTTTACGAGGAAGTGATTATCGACAATTGCTGCATGATGgtaagcttca ... tttcttgcagCTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTAT
EST: ATCCCGAAATCGTTTACGAGGAAGTGATTATCGACAATTGCTGCATGATG CTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTATEST: gi|169057398|gb|FE465702.1|FE465702
genomic: ATCCCGAAATCGTTTACGAGGAAGTGATTATCGACAATTGCTGCATGATGgtaagcttca ... tttcttgcagCTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTAT
EST: ATCCCGAAATCGTTTACGAGGAAGTGATTATCGACAATTGCTGCATGATG CTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTAT
genomic: ATCCCGAAATCGTTTACGAGGAAGTGATTATCGACAATTGCTGCATGATGgtaagcttca ... tttcttgcagCTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTAT
ttcaaaatcagactttttgtcgttcagcctctctgatcctgcttgtttcttgcagCTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTATGGAGATATCATCAGTGATCTCTGCGCTGGTCTCATAGGCGGCCTTGGAT
ctctgat putative branch site (score: 12)
tcctgcttgtttctt CT-rich tract
acttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttcaaaatcagactttttgtcgttcagcctctctgatcctgcttgtttcttgcagCTCGTAAAAAATCCTGCCTTGTTTGACGTGTTGGTGATGCCAAACTTGTATGGAGATATCATCAGTGATCTCTGCGCTGGTCTCATAGGCGGCCTTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT