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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttctcgttctcacttaacaaaacattcaaacttaaggctttgtttatatccagGTGACGAACCAATTTGCTGTGAGTAGTCGGTTTGGAACTCCAGAAGATTTCAAGTTTCTGGTCGATACTGCGCATG

Basic information

species Selaginella moellendorffii
transcript EFJ09511
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169067630|gb|FE475827.1|FE475827
EST:     AGCTCATGGGAGTGCAAGAACATGTCGACTACTCCAGTGTTGGTTACAAG                         GTGACGAACCAATTTGCTGTGAGTAGTCGGTTTGGAACTCCAGAAGATTTC
genomic: AGCTCATGGGAGTGCAAGAACATGTCGACTACTCCAGTGTTGGTTACAAGgttttctcgt ... ttatatccagGTGACGAACCAATTTGCTGTGAGTAGTCGGTTTGGAACTCCAGAAGATTTC
EST: gi|169082692|gb|FE486732.1|FE486732
EST:     AGCTCATGGGAGTGCAAGAACATGTCGACTACTCCAGTGTTGGTTACAAG                         GTGACGAACCAATTTGCTGTGAGTAGTCGGTTTGGAACTCCAGAAGATTTC
genomic: AGCTCATGGGAGTGCAAGAACATGTCGACTACTCCAGTGTTGGTTACAAGgttttctcgt ... ttatatccagGTGACGAACCAATTTGCTGTGAGTAGTCGGTTTGGAACTCCAGAAGATTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctcgttctcacttaacaaaacattcaaacttaaggctttgtttatatccagGTGACGAACCAATTTGCTGTGAGTAGTCGGTTTGGAACTCCAGAAGATTTCAAGTTTCTGGTCGATACTGCGCATG
                                       ctttgttt  CT-rich tract
                                        tttgtttatat  TA-rich tract