1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcagttttttcattgacaattaggaggaagcatttcggttttccttgcaatcttccaatgaactttctttaactctcgtcgtgcagCTTCCAATGGATTACTAGCTACGGAAGATCCAAACTGGCCAACATACTGCATACCAGGGAGTTAGCAAGCCGCTTGAAG
species | Selaginella moellendorffii |
transcript | EFJ09306 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATGTTCCAAAAGGCGGGATTGAGTTTGACAAGCTGAATGATAAGAACAG CTTCCAATGGATTACTAGCTACGGAAGATCCAAACTGGCCAACATACTGCAEST: gi|169103892|gb|FE508376.1|FE508376
genomic: TATGTTCCAAAAGGCGGGATTGAGTTTGACAAGCTGAATGATAAGAACAGgtcagttttt ... cgtcgtgcagCTTCCAATGGATTACTAGCTACGGAAGATCCAAACTGGCCAACATACTGCA
EST: TATGTTCCAAAAGGCGGGATTGAGTTTGACAAGCTGAATGATAAGAACAG CTTCCAATGGATTACTAGCTACGGAAGATCCAAACTGGCCAACATACTGCAEST: gi|169103891|gb|FE508375.1|FE508375
genomic: TATGTTCCAAAAGGCGGGATTGAGTTTGACAAGCTGAATGATAAGAACAGgtcagttttt ... cgtcgtgcagCTTCCAATGGATTACTAGCTACGGAAGATCCAAACTGGCCAACATACTGCA
EST: TATGTTCCAAAAGGCGGGATTGAGTTTGACAAGCTGAATGATAAGAACAG CTTCCAATGGATTACTAGCTACGGAAGATCCAAACTGGCCAACATACTGCAEST: gi|169113028|gb|FE514884.1|FE514884
genomic: TATGTTCCAAAAGGCGGGATTGAGTTTGACAAGCTGAATGATAAGAACAGgtcagttttt ... cgtcgtgcagCTTCCAATGGATTACTAGCTACGGAAGATCCAAACTGGCCAACATACTGCA
EST: TATGTTCCAAAAGGCGGGATTGAGTTTGACAAGCTGAATGATAAGAACAG CTTCCAATGGATTACTAGCTACGGAAGATCCAAACTGGCCAACATACTGCA
genomic: TATGTTCCAAAAGGCGGGATTGAGTTTGACAAGCTGAATGATAAGAACAGgtcagttttt ... cgtcgtgcagCTTCCAATGGATTACTAGCTACGGAAGATCCAAACTGGCCAACATACTGCA
atttcggttttccttgcaatcttccaatgaactttctttaactctcgtcgtgcagCTTCCAATGGATTACTAGCTACGGAAGATCCAAACTGGCCAACATACTGCATACCAGGGAGTTAGCAAGCCGCTTGAAG
ctttaac putative branch site (score: 73)
ctttctttaactctc CT-rich tract
tttctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttttttcattgacaattaggaggaagcatttcggttttccttgcaatcttccaatgaactttctttaactctcgtcgtgcagCTTCCAATGGATTACTAGCTACGGAAGATCCAAACTGGCCAACATACTGCATACCAGGGAGTTAGCAAGCCGCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG