1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagcttgtatcatagcgatcgtcttaatgctggtgaatttgcagTTCTCGACGCACAAGCGAAGTATACTGGCTTGCGGTGATATCTCGCAGTTCATACCCGATAAAGAAGCAGACGTCGCGGTTTTGGAGGAGCCGGAGCATC
species | Selaginella moellendorffii |
transcript | EFJ09054 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAGAATTGGATTCAAGGCGGATTTCAAGATTGCATTCTACCCCGGCAGA TTCTCGACGCACAAGCGAAGTATACTGGCTTGCGGTGATATCTCGCAGTTCEST: gi|169113829|gb|FE515377.1|FE515377
genomic: AAAGAATTGGATTCAAGGCGGATTTCAAGATTGCATTCTACCCCGGCAGAgtaagcttgt ... gaatttgcagTTCTCGACGCACAAGCGAAGTATACTGGCTTGCGGTGATATCTCGCAGTTC
EST: AAAGAATTGGATTCAAGGCGGATTTCAAGATTGCATTCTACCCCGGCAGA TTCTCGACGCACAAGCGAAGTATACTGGCTTGCGGTGATATCTCGCAGTTCEST: gi|169113464|gb|FE514999.1|FE514999
genomic: AAAGAATTGGATTCAAGGCGGATTTCAAGATTGCATTCTACCCCGGCAGAgtaagcttgt ... gaatttgcagTTCTCGACGCACAAGCGAAGTATACTGGCTTGCGGTGATATCTCGCAGTTC
EST: AAAGAATTGGATTCAAGGCGGATTTCAAGATTGCATTCTACCCCGGCAGA TTCTCGACGCACAAGCGAAGTATACTGGCTTGCGGTGATATCTCGCAGTTC
genomic: AAAGAATTGGATTCAAGGCGGATTTCAAGATTGCATTCTACCCCGGCAGAgtaagcttgt ... gaatttgcagTTCTCGACGCACAAGCGAAGTATACTGGCTTGCGGTGATATCTCGCAGTTC
gtaagcttgtatcatagcgatcgtcttaatgctggtgaatttgcagTTCTCGACGCACAAGCGAAGTATACTGGCTTGCGGTGATATCTCGCAGTTCATACCCGATAAAGAAGCAGACGTCGCGGTTTTGGAGGAGCCGGAGCATC
tcttaat putative branch site (score: 23)
tatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttgtatcatagcgatcgtcttaatgctggtgaatttgcagTTCTCGACGCACAAGCGAAGTATACTGGCTTGCGGTGATATCTCGCAGTTCATACCCGATAAAGAAGCAGACGTCGCGGTTTTGGAGGAGCCGGAGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA