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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatagaagtatttcttgtagctttgaaaatattgcattccagGGCCTGGGCATCACCATCTTCGGGATGGCCTACATGTTTGTTCACGACGGCCTGGTGCACCAAAGGTTTCCAGTTGGCCCACTGGCCGATGTACCATACT

Basic information

species Selaginella moellendorffii
transcript EFJ08548
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ08548 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: EDO99380 (Chlamydomonas reinhardtii), 3'ss of exon 4
--------------------------------------------------------------------------gtaagtaatagaagtatttcttgtagctttgaaaatattgcatt--ccagGGCCTGGGCATCACCATCTTCGGGATGGCCTACATGTTTGTTCACGACGGCCTGGTGCACCAAAGGTTTCCAGTTGGCCCACTGGCCGATGTACCATACT
| || || | | ||| | | ||| ||||||||||| | ||||| || ||||||||||| | ||||||||||||||||||| | || || || |
tcatactacgcgtgctccatctcgggcggggcggtggcatcccattcttcccatttcccaccactacctgcctacctcccatcccaaacccccaacccagATCGGCGGCGTGTGCTTCGGCGCGGGTCTGGGCATCACGCTGTTCGGCATCGCCTACATGTTCTTCCACGACGGCCTGGTGCACCGCCGCTTCCCCGTGG------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtaatagaagtatttcttgtagctttgaaaatattgcattccagGGCCTGGGCATCACCATCTTCGGGATGGCCTACATGTTTGTTCACGACGGCCTGGTGCACCAAAGGTTTCCAGTTGGCCCACTGGCCGATGTACCATACT
                         taatagaagtattt  TA-rich tract