1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgatcctctttatctgattctctctcactcgtgcaagtgactgacttttgtgatgtgaacttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTAGGGGGTCCGCAGCACTTTGGCTTGCCAAGGGAGGAAGTCGAAGAAGCG
species | Selaginella moellendorffii |
transcript | EFJ08399 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169087065|gb|FE495157.1|FE495157
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169101055|gb|FE500643.1|FE500643
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAAACA-GCTAGGACEST: gi|169058746|gb|FE464784.1|FE464784
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAA-CAAGCTAGGAC
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169043618|gb|FE452686.1|FE452686
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169115002|gb|FE516367.1|FE516367
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169062456|gb|FE469515.1|FE469515
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169048081|gb|FE456796.1|FE456796
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169065055|gb|FE474503.1|FE474503
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169023042|gb|FE431590.1|FE431590
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169063746|gb|FE472476.1|FE472476
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169108039|gb|FE511021.1|FE511021
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169099405|gb|FE500488.1|FE500488
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169072467|gb|FE483863.1|FE483863
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169072466|gb|FE483862.1|FE483862
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169106626|gb|FE504648.1|FE504648
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169065054|gb|FE474502.1|FE474502
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169067484|gb|FE475239.1|FE475239
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169063745|gb|FE472475.1|FE472475
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTCCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169062455|gb|FE469514.1|FE469514
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169048080|gb|FE456795.1|FE456795
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169054112|gb|FE462347.1|FE462347
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169099404|gb|FE500487.1|FE500487
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: CAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169106627|gb|FE504649.1|FE504649
genomic: CAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169087066|gb|FE495158.1|FE495158
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169058747|gb|FE464785.1|FE464785
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169108040|gb|FE511022.1|FE511022
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTEST: gi|169023043|gb|FE431591.1|FE431591
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
EST: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAA GTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
genomic: AAGCCAGTTCTCGACGAGATCGAGCAAGGAGGCCCAGCAGCTATGATGAAgtacgatcct ... cttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGT
tgattctctctcactcgtgcaagtgactgacttttgtgatgtgaacttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTAGGGGGTCCGCAGCACTTTGGCTTGCCAAGGGAGGAAGTCGAAGAAGCG
gactgac putative branch site (score: 157)
cttttgcc putative PPT
aactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgatcctctttatctgattctctctcactcgtgcaagtgactgacttttgtgatgtgaacttttgccagGTACTGGAATGATCCCGATGTTCTTAACAAGCTAGGACGGGCAATGGGAGTAGGGGGTCCGCAGCACTTTGGCTTGCCAAGGGAGGAAGTCGAAGAAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC