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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggccctggactcggtctctccttgcctgatttgtccttgcctgcagATGGAAATGGATTTAAGACGAGCACAATGCGTCTAGGTGCGGATGTTATCGTTTTAACACGTTGTGTCCGTGACAG

Basic information

species Selaginella moellendorffii
transcript EFJ08242
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ08242 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G372477_T01 (Zea mays), 3'ss of exon 6
-------------------------------------------gtaagtggc--cctggactc---ggtctctccttgcctgatttgtccttgcctgcagATGGAAATGGATTTAAGACGAGCACAATGCGTCTAGGTGCGGATGTTATCGTTTTAACACGTTGTGTCCGTGACAG
                                           | ||||     |||| |  |    ||||  | ||     |||| ||  |     ||||||||||||| |||||||| ||||||||||| || || || |||||||| ||||| |  || ||         |||
tcttcgattggacaatgtattgccaacttttgttctataatcagcaagtcatatcctgaaacccattgtctaacgttttggcatttatcactttgatcagATGGAAATGGTTTTAAGACTAGCACAATGCGGCTTGGGGCAGATGTTATTGTTTTCAGTCGCTGCACTAAGAGCAG

upper sequence: EFJ08242 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G021864_T01 (Zea mays), 3'ss of exon 5
-------------------------------------------gtaagtggccctggact-cggtctctc----cttgcctgatttgtccttgcctgcagATGGAAATGGATTTAAGACGAGCACAATGCGTCTAGGTGCGGATGTTATCGTTTTAACACGTTGTGTCCGTGACAG
                                            |||    |   | | | | ||||||     ||| | |   || | ||     |||||||||||||| |||||||| ||||||||| | || ||||| ||||  || ||||| || |||  | |||| |   |
tataattttttatttagtatctagcttctttataatagcatgtataaaactcttggtattgctgtctcttgttactttcttaccttcttctactgcgcagATGGAAATGGCTTTAAGACAAGCACAATGAGACTTGGTGCAGATGCAATTGTTTTTACTCGTGCTATCCGAGGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtggccctggactcggtctctccttgcctgatttgtccttgcctgcagATGGAAATGGATTTAAGACGAGCACAATGCGTCTAGGTGCGGATGTTATCGTTTTAACACGTTGTGTCCGTGACAG
                                gcctgat  putative branch site (score: 4)
                                      tttgtcctt  CT-rich tract