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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaatttcgttttgatacttccatccaccgctttggttgctattccgcagGTTATGCCGTATTACGATCATGTTAATGTTATGGATTCAGACGACGAGCTGGATCTGCCAAAAGACGGATAAAAAAAAACTAGAAAAATGCCACGACTGC

Basic information

species Selaginella moellendorffii
transcript EFJ07602
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169060182|gb|FE468168.1|FE468168
EST:     TTTGCGAGCCCGACATTTGTGTTTTTGAGGCGGTCTTCCCGCGGCCACAT                         GTTATGCCGTATTACGATCATGTTAATGTTATGGATTCAGACGACGAGCTG
genomic: TTTGCGAGCCCGACATTTGTGTTTTTGAGGCGGTCTTCCCGCGGCCACATgtaagcaatt ... tattccgcagGTTATGCCGTATTACGATCATGTTAATGTTATGGATTCAGACGACGAGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagcaatttcgttttgatacttccatccaccgctttggttgctattccgcagGTTATGCCGTATTACGATCATGTTAATGTTATGGATTCAGACGACGAGCTGGATCTGCCAAAAGACGGATAAAAAAAAACTAGAAAAATGCCACGACTGC
              ttttgat  putative branch site (score: 4)
                                            ctattcc  putative PPT
              ttttgata  TA-rich tract