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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgtatttcgattcggagtttgtcgtttaatcctttgtatttgcagGAAAAAAATAACCCGGGACTAACAAAGCCTAGATTCTTTACAGTCGGTCGCTTAGATGTTGCCACAACTGGTCTTATATTCGTTACGAATGACG

Basic information

species Selaginella moellendorffii
transcript EFJ07534
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ07534 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: Vv13s0019g04740.t01 (Vitis vinifera), 3'ss of exon 4
------------------------------------------------------------------------------------------------------------------------------gttagtgtatttcgattcggagtttgtcgtttaatcctttgtatttgcagGAAAAAAATAACCCGGGACTAACAAAGCCTAGATTCTTTACAGTCGGTCGCTTAGATGTTGCCACAACTGGTCTTATATTCGTTACGAATGACG
                                                                                                                               ||| ||| | |   ||   | |   |  | | || ||||| |||| ||| | ||| | || || ||| || |||| || ||| |||||||||| |||||| | |||||||||||||||||  | ||  |  | || ||||| |
gtatgtgtagattgaacctctaggataccatttttctgatatgtatctttttcgcagaaagcttctattcctttgcttttaaatttcagcatatctttatataaatatcatttattcattaatttatttactgt-tatgtcttttaaatccattatgtgatactttgcatttccagAACAAACAAAATCCTGGAGTACCAAAACCAAGAATCTTTACAGTGGGTCGCCTTGATGTTGCCACAACTGGGTTGATTATTTTGACCAATGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagtgtatttcgattcggagtttgtcgtttaatcctttgtatttgcagGAAAAAAATAACCCGGGACTAACAAAGCCTAGATTCTTTACAGTCGGTCGCTTAGATGTTGCCACAACTGGTCTTATATTCGTTACGAATGACG
                                 gtttaat  putative branch site (score: 4)
                                       tcctttgt  CT-rich tract
                                          tttgtattt  TA-rich tract