1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagttttctactagagttccatctcttgactgacgatgatttgttttttgtgctctgtccagCGAGGACTTTCGATACGAGGTCCAGCTCTTGGTGAAGTTACGACATCCAAACATTGTCCAGTTCCTGGGAGCCGTCACAAAGAAACCACCTCTCATGCTC
species | Selaginella moellendorffii |
transcript | EFJ07191 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTAGCGGCCAAGACAATTCTACCCTCTCTTTGCAACGACAGAATGGTGGT CGAGGACTTTCGGTACGAGGTCCAGCTCTTGGTGAAGTTACGACATCCAAAEST: gi|169028976|gb|FE438636.1|FE438636
genomic: GTAGCGGCCAAGACAATTCTACCCTCTCTTTGCAACGACAGAATGGTGGTgtaagttttc ... ctctgtccagCGAGGACTTTCGATACGAGGTCCAGCTCTTGGTGAAGTTACGACATCCAAA
EST: GTAGCGGCCAAGACAATTCTACCCTCTCTTTGCAACGACAGAATGGTGGT CGAGGACTTTCGATACGAGGTCCAGCTCTTGGTGAAGTTACGACATCCAAAEST: gi|169058357|gb|FE465045.1|FE465045
genomic: GTAGCGGCCAAGACAATTCTACCCTCTCTTTGCAACGACAGAATGGTGGTgtaagttttc ... ctctgtccagCGAGGACTTTCGATACGAGGTCCAGCTCTTGGTGAAGTTACGACATCCAAA
EST: GTAGCGGCCAAGACAATTCTACCCTCTCTTTGCAACGACAGAATGGTGGT CGAGGACTTTCGATACGAGGTCCAGCTCTTGGTGAAGTTACGACATCCAAA
genomic: GTAGCGGCCAAGACAATTCTACCCTCTCTTTGCAACGACAGAATGGTGGTgtaagttttc ... ctctgtccagCGAGGACTTTCGATACGAGGTCCAGCTCTTGGTGAAGTTACGACATCCAAA
ctactagagttccatctcttgactgacgatgatttgttttttgtgctctgtccagCGAGGACTTTCGATACGAGGTCCAGCTCTTGGTGAAGTTACGACATCCAAACATTGTCCAGTTCCTGGGAGCCGTCACAAAGAAACCACCTCTCATGCTC
gactgac putative branch site (score: 13)
ctctgtcc putative PPT
atgatttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttctactagagttccatctcttgactgacgatgatttgttttttgtgctctgtccagCGAGGACTTTCGATACGAGGTCCAGCTCTTGGTGAAGTTACGACATCCAAACATTGTCCAGTTCCTGGGAGCCGTCACAAAGAAACCACCTCTCATGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA