1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtcactgctcaaacttgcaaggcctttaacgcaaacgtccaccgcttcttcagGAATACAAAGAATGGATATTGAAAGTTCTACAGGATACCTGGAATTTATTCAAAGAGAAGTTCCTTCTCTTGTGGACAGACAAATCCCAGAGCATGGGCG
species | Selaginella moellendorffii |
transcript | EFJ06533 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGCGTACTTTTCACAAGACGGTCATACGTCTGACAACAGCAATAGAGAT GAATACAAAGAATGGATATTGAAAGTTCTACAGGATACCTGGAATTTATTCEST: gi|169067163|gb|FE474931.1|FE474931
genomic: TTGCGTACTTTTCACAAGACGGTCATACGTCTGACAACAGCAATAGAGATgtaagtcact ... gcttcttcagGAATACAAAGAATGGATATTGAAAGTTCTACAGGATACCTGGAATTTATTC
EST: TTGCGTACTTTTCACAAGACGGTCATACGTCTGACAACAGCAATAGAGAT GAATACAAAGAATGGATATTGAAAGTTCTACAGGATACCTGGAATTTATTCEST: gi|169067162|gb|FE474930.1|FE474930
genomic: TTGCGTACTTTTCACAAGACGGTCATACGTCTGACAACAGCAATAGAGATgtaagtcact ... gcttcttcagGAATACAAAGAATGGATATTGAAAGTTCTACAGGATACCTGGAATTTATTC
EST: TTGCGTACTTTTCACAAGACGGTCATACGTCTGACAACAGCAATAGAGAT GAATACAAAGAATGGATATTGAAAGTTCTACAGGATACCTGGAATTTATTCEST: gi|169068749|gb|FE478442.1|FE478442
genomic: TTGCGTACTTTTCACAAGACGGTCATACGTCTGACAACAGCAATAGAGATgtaagtcact ... gcttcttcagGAATACAAAGAATGGATATTGAAAGTTCTACAGGATACCTGGAATTTATTC
EST: TTGCGTACTTTTCACAAGACGGTCATACGTCTGACAACAGCAATAGAGAT GAATACAAAGAATGGATATTGAAAGTTCTACAGGATACCTGGAATTTATTC
genomic: TTGCGTACTTTTCACAAGACGGTCATACGTCTGACAACAGCAATAGAGATgtaagtcact ... gcttcttcagGAATACAAAGAATGGATATTGAAAGTTCTACAGGATACCTGGAATTTATTC
aagtcactgctcaaacttgcaaggcctttaacgcaaacgtccaccgcttcttcagGAATACAAAGAATGGATATTGAAAGTTCTACAGGATACCTGGAATTTATTCAAAGAGAAGTTCCTTCTCTTGTGGACAGACAAATCCCAGAGCATGGGCG
ctttaac putative branch site (score: 4)
tccaccgcttcttc putative PPT
tttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcactgctcaaacttgcaaggcctttaacgcaaacgtccaccgcttcttcagGAATACAAAGAATGGATATTGAAAGTTCTACAGGATACCTGGAATTTATTCAAAGAGAAGTTCCTTCTCTTGTGGACAGACAAATCCCAGAGCATGGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA