1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcttgtttttttttatgatcatttgatttgtcctctgatattgtttttgcttctcagGACCTAGGTGGCTCTGTAGGACGTGAGGCTGCCACTGGAAGAGGAGTTGTATACGTGACTGAAGCATTGCTTGCCGACCATGGCAAGTCTCTCTCGAACC
species | Selaginella moellendorffii |
transcript | EFJ06181 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTCCAAGTTTCATGGGTACTCTCCAGCAGTAGTCACT-GAAAGCCACTT GACCTAGGTGGCTCTGTAGGACGTGAGGCTGCCACTGGAAGAGGAGTGGTAEST: gi|169067884|gb|FE474755.1|FE474755
genomic: ACTCCAAGTTTCATGGGTACTCTCCAGCAGTAGTCACTGGAAAGCCACTTgtaagcttgt ... tgcttctcagGACCTAGGTGGCTCTGTAGGACGTGAGGCTGCCACTGGAAGAGGAGTTGTA
EST: ACTCCAAGTTTCATGGGTACTCTCCAGCAGTAGTCACTGGAAAGCCACTT GACCTAGGTGGCTCTGTAGGACGTGAGGCTGCCACTGGAAGAGGAGTTGTA
genomic: ACTCCAAGTTTCATGGGTACTCTCCAGCAGTAGTCACTGGAAAGCCACTTgtaagcttgt ... tgcttctcagGACCTAGGTGGCTCTGTAGGACGTGAGGCTGCCACTGGAAGAGGAGTTGTA
ttgtttttttttatgatcatttgatttgtcctctgatattgtttttgcttctcagGACCTAGGTGGCTCTGTAGGACGTGAGGCTGCCACTGGAAGAGGAGTTGTATACGTGACTGAAGCATTGCTTGCCGACCATGGCAAGTCTCTCTCGAACC
ctctgat putative branch site (score: 51)
ttgtttttgcttctc CT-rich tract
tttttttatgatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttgtttttttttatgatcatttgatttgtcctctgatattgtttttgcttctcagGACCTAGGTGGCTCTGTAGGACGTGAGGCTGCCACTGGAAGAGGAGTTGTATACGTGACTGAAGCATTGCTTGCCGACCATGGCAAGTCTCTCTCGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC