1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtgtagggaaaagaaagtttgtgttttggcttctcagagtacctcactcattctgtgtcaccagATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGCTGCTGCCTTTGTGGTCTGCAAGAGGAAGCATCGCGGGAACATCAAGGAC
species | Selaginella moellendorffii |
transcript | EFJ05347 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACCTCGAAAGTGGGAGGCACAGTCTCATCGACTTGTTTATGAATGATAG ATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGCEST: gi|169068013|gb|FE476380.1|FE476380
genomic: AACCTCGAAAGTGGGAGGCACAGTCTCATCGACTTGTTTATGAATGATAGgtgagtgtag ... gtgtcaccagATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGC
EST: AACCTCGAAAGTGGGAGGCACAGTCTCATCGACTTGTTTATGAATGATAG ATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGCEST: gi|169077432|gb|FE485916.1|FE485916
genomic: AACCTCGAAAGTGGGAGGCACAGTCTCATCGACTTGTTTATGAATGATAGgtgagtgtag ... gtgtcaccagATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGC
EST: AACCTCGAAAGTGGGAGGCATAGTCTCATCGACTTGTTTATGAATGATAG ATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGCEST: gi|169059522|gb|FE468548.1|FE468548
genomic: AACCTCGAAAGTGGGAGGCACAGTCTCATCGACTTGTTTATGAATGATAGgtgagtgtag ... gtgtcaccagATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGC
EST: AACCTCGAAAGTGGGAGGCATAGTCTCATCGACTTGTTTATGAATGATAG ATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGCEST: gi|169065807|gb|FE475931.1|FE475931
genomic: AACCTCGAAAGTGGGAGGCACAGTCTCATCGACTTGTTTATGAATGATAGgtgagtgtag ... gtgtcaccagATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGC
EST: AACCTCGAAAGTGGGAGGCATAGTCTCATCGACTTGTTTATGAATGATAG ATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGCEST: gi|169068000|gb|FE476379.1|FE476379
genomic: AACCTCGAAAGTGGGAGGCACAGTCTCATCGACTTGTTTATGAATGATAGgtgagtgtag ... gtgtcaccagATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGC
EST: AACCTCGAAAGTGGGAGGCACAGTCTCATCGACTTGTTTATGAATGATAG ATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGCEST: gi|169059523|gb|FE468549.1|FE468549
genomic: AACCTCGAAAGTGGGAGGCACAGTCTCATCGACTTGTTTATGAATGATAGgtgagtgtag ... gtgtcaccagATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGC
EST: AACCTCGAAAGTGGGAGGCATAGTCTCATCGACTTGTTTATGAATGATAG ATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGC
genomic: AACCTCGAAAGTGGGAGGCACAGTCTCATCGACTTGTTTATGAATGATAGgtgagtgtag ... gtgtcaccagATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGC
aaagaaagtttgtgttttggcttctcagagtacctcactcattctgtgtcaccagATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGCTGCTGCCTTTGTGGTCTGCAAGAGGAAGCATCGCGGGAACATCAAGGAC
acctcac putative branch site (score: 9)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgtagggaaaagaaagtttgtgttttggcttctcagagtacctcactcattctgtgtcaccagATACCTTCATGTGATACAAACGCATGCACACCATCTGCTGAGGTACCTCGCTGCTGCCTTTGTGGTCTGCAAGAGGAAGCATCGCGGGAACATCAAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA