1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attagaatttactatggtggatcacactgcagcatacgatcttatactgaaagctcggttggtttttccaggatcaacagctctatcttcccggggcgagCTCCCCCACGACAGCCGACTACAGCCCATTTGTGCCGGGGTCCCCCACAATGGGCCTCCCGGCGGGGCTGCGCGAGCACAAGGGTGGCGGCGGCGGGGAC
species | Selaginella moellendorffii |
transcript | EFJ05156 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
actgaaagctcggttggtttttccaggatcaacagctctatcttcccggggcgagCTCCCCCACGACAGCCGACTACAGCCCATTTGTGCCGGGGTCCCCCACAATGGGCCTCCCGGCGGGGCTGCGCGAGCACAAGGGTGGCGGCGGCGGGGAC
ctctatcttccc CT-rich tract
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagaatttactatggtggatcacactgcagcatacgatcttatactgaaagctcggttggtttttccaggatcaacagctctatcttcccggggcgagCTCCCCCACGACAGCCGACTACAGCCCATTTGTGCCGGGGTCCCCCACAATGGGCCTCCCGGCGGGGCTGCGCGAGCACAAGGGTGGCGGCGGCGGGGAC
- - - atttact
- - - - - - - - - - - - - ctgcagc
- - - - - - - - - - - - - - - - - - cgatctt
- - - - - - - - - - - - - - - - - - - - - - - - -aaagctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttttcc