1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaaaaagcatcactgtttttttattttcggcaactgacaaatcctgtgtttgtttccagCACGCTACTCATACAGTGGTCTTCTCTCAGCTGCATATGAATGGAAAGAACGAGGGAGTGCACGCATTTATTGCTGAAATAAGGAGTCCGGATGGCCGAA
species | Selaginella moellendorffii |
transcript | EFJ04838 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACACTCCATGCGAGTCTGCTCAGAAATACTGGATAGGAGGAGCGGCAATG CACGCTACTCATACAGTGGTCTTCTCTCAGCTGCATATGAATGGAAAGAACEST: gi|169097814|gb|FE498243.1|FE498243
genomic: ACACTCCATGCGAGTCTGCTCAGAAATACTGGATAGGAGGAGCGGCAATGgtaaaaagca ... ttgtttccagCACGCTACTCATACAGTGGTCTTCTCTCAGCTGCATATGAATGGAAAGAAC
EST: ACACTCCATGCGAGTCTGCTCAGAAATACTGGATAGGAGGAGCGGCAATG CACGCTACTCATACAGTGGTCTTCTCTCAGCTGCATATGAATGGGAAGAAC
genomic: ACACTCCATGCGAGTCTGCTCAGAAATACTGGATAGGAGGAGCGGCAATGgtaaaaagca ... ttgtttccagCACGCTACTCATACAGTGGTCTTCTCTCAGCTGCATATGAATGGAAAGAAC
aagcatcactgtttttttattttcggcaactgacaaatcctgtgtttgtttccagCACGCTACTCATACAGTGGTCTTCTCTCAGCTGCATATGAATGGAAAGAACGAGGGAGTGCACGCATTTATTGCTGAAATAAGGAGTCCGGATGGCCGAA
aactgac putative branch site (score: 6)
tttgtttcc putative PPT
actgtttttttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaagcatcactgtttttttattttcggcaactgacaaatcctgtgtttgtttccagCACGCTACTCATACAGTGGTCTTCTCTCAGCTGCATATGAATGGAAAGAACGAGGGAGTGCACGCATTTATTGCTGAAATAAGGAGTCCGGATGGCCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG