1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtcacctctttcattttccgtattctacaaaactctaacccgagatctctctacagGCTTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGCAAAGACGTGCTGGCCAAGTGCTACG
species | Selaginella moellendorffii |
transcript | EFJ04299 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAG GCTTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGCEST: gi|169045075|gb|FE452791.1|FE452791
genomic: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAGgtgtcacctc ... ctctctacagGCTTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGC
EST: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAG GCTTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGCEST: gi|169095873|gb|FE498915.1|FE498915
genomic: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAGgtgtcacctc ... ctctctacagGCTTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGC
EST: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAG GCTTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGCEST: gi|169038418|gb|FE446119.1|FE446119
genomic: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAGgtgtcacctc ... ctctctacagGCTTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGC
EST: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAG GCTTGCCTTGGGTCAAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGCEST: gi|169062192|gb|FE469199.1|FE469199
genomic: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAGgtgtcacctc ... ctctctacagGCTTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGC
EST: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAG GCGTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGC
genomic: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAGgtgtcacctc ... ctctctacagGCTTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGC
tcacctctttcattttccgtattctacaaaactctaacccgagatctctctacagGCTTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGCAAAGACGTGCTGGCCAAGTGCTACG
ctctaac putative branch site (score: 7)
tctctctac putative PPT
tttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtcacctctttcattttccgtattctacaaaactctaacccgagatctctctacagGCTTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGCAAAGACGTGCTGGCCAAGTGCTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG