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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagttgactggttccactcgcttgaatgctgccattgattttatagtatgaactttctcttgtcaaatgaagCTCATGGAGACACAATGCGGTCGCTGTGGAGAATGGGCCAATTGTTTTACATTCTACTGCGTTGCGCTAGGCTACAATGCTCGTCTG

Basic information

species Selaginella moellendorffii
transcript EFJ38668
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38668 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: LOC_Os07g31460.1 (Oryza sativa), 3'ss of exon 8
-----------------------gtaaagttgactggttccactcgcttgaa-tgctgccattgattttatagtatgaactttctcttgtcaaat--gaagCTCATGGAGACACAATGCGGTCGCTGTGGAGAATGGGCCAATTGTTTTACATTCTACTGCGTTGCGCTAGGCTACAATGCTCGTCTG
                       || |  |    || |     ||     || ||       || |   || || ||  |      || |    |  ||||||  | || ||       || ||||||||||||||||||||||| ||||||||||||||        | || ||  | |||||||||
gtatgaataagtcctgttattgtgtgagataaggtgttatttttcaaccaaactgaaattgatggtcaaattgtctgttccaatatttattgctttggaagCTTCTAGAAACTAGGAAAGGACGCTGTGGAGAATGGGCCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgcttgaatgctgccattgattttatagtatgaactttctcttgtcaaatgaagCTCATGGAGACACAATGCGGTCGCTGTGGAGAATGGGCCAATTGTTTTACATTCTACTGCGTTGCGCTAGGCTACAATGCTCGTCTG
               cattgat  putative branch site (score: 4)
                                   ctttctcttgtc  putative PPT
                attgattttatagtat  TA-rich tract