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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctcttcgttgttacatagatttccaagctttgtccattggtttttacgttttttccagGAGCTTACGTTCTGGAAGCTCTCAAGGACGAGTATCCATCCGCTTGCATCTTCAGCCACAGCATCTGGCCCTTCCAGAGCGGCGAGGTCGTCGTGCAAAA

Basic information

species Selaginella moellendorffii
transcript EFJ38286
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169048480|gb|FE455727.1|FE455727
EST:     AGGTTTCCTCGGCATCCAGAGCTTGGCTGGTGGTACTGGAGCCGGTTTTG                         GAGCTTACGTTCTGGAAGCTCTCAAGGACGAGTATCCATCCGCTTGCATCT
genomic: AGGTTTCCTCGGCATCCAGAGCTTGGCTGGTGGTACTGGAGCCGGTTTTGgtgagtctct ... ttttttccagGAGCTTACGTTCTGGAAGCTCTCAAGGACGAGTATCCATCCGCTTGCATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgttgttacatagatttccaagctttgtccattggtttttacgttttttccagGAGCTTACGTTCTGGAAGCTCTCAAGGACGAGTATCCATCCGCTTGCATCTTCAGCCACAGCATCTGGCCCTTCCAGAGCGGCGAGGTCGTCGTGCAAAA
                                     tttttacgttttttcc  CT-rich tract
                                     tttttacgtttttt  TA-rich tract