1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacgtgatctaatcttcccattttctttgctttaagcgtgcgattccagAATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTCAAACGATTTCCAGCAAGTGTCGCGGGTTGCACGCCAGATGGTGGAGCGA
species | Selaginella moellendorffii |
transcript | EFJ37923 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAG AATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTCEST: gi|169078642|gb|FE487074.1|FE487074
genomic: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAGgtacgtgatc ... gcgattccagAATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTC
EST: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAG AATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTCEST: gi|169078641|gb|FE487073.1|FE487073
genomic: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAGgtacgtgatc ... gcgattccagAATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTC
EST: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAG AATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTCEST: gi|169024157|gb|FE435187.1|FE435187
genomic: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAGgtacgtgatc ... gcgattccagAATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTC
EST: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAG AATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTCEST: gi|169068737|gb|FE478430.1|FE478430
genomic: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAGgtacgtgatc ... gcgattccagAATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTC
EST: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAG AATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTCEST: gi|169032230|gb|FE438811.1|FE438811
genomic: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAGgtacgtgatc ... gcgattccagAATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTC
EST: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAG AATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTCEST: gi|169019487|gb|FE427173.1|FE427173
genomic: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAGgtacgtgatc ... gcgattccagAATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTC
EST: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAG AATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTCEST: gi|169069494|gb|FE480565.1|FE480565
genomic: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAGgtacgtgatc ... gcgattccagAATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTC
EST: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAG AATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTCEST: gi|169024158|gb|FE435188.1|FE435188
genomic: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAGgtacgtgatc ... gcgattccagAATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTC
EST: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAG AATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTC
genomic: TACAGCCGAAGCTACTTGGAGAACCAGATGGCGGTGGCTCTTGGGGGAAGgtacgtgatc ... gcgattccagAATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTC
gtacgtgatctaatcttcccattttctttgctttaagcgtgcgattccagAATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTCAAACGATTTCCAGCAAGTGTCGCGGGTTGCACGCCAGATGGTGGAGCGA
atctaat putative branch site (score: 41)
attttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgatctaatcttcccattttctttgctttaagcgtgcgattccagAATCGCGGAGGAGGTGATCTTCGGCCCCGAGAACGTCACCACCGGAGCTTCAAACGATTTCCAGCAAGTGTCGCGGGTTGCACGCCAGATGGTGGAGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG