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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttcttcctagccttgccttgtttattttcctaaaactttctatgatagGTACTTGTCTAATAACCAGTTGACTGGTCTTCCATACTCTCTGAAAGATTTGTGGTCTCTAACGAAAAT

Basic information

species Selaginella moellendorffii
transcript EFJ37538
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169097679|gb|FE499278.1|FE499278
EST:     CAACTCAGTCAAGCGATCCCGTACCAGCTTCCGCCACAACTACAAGAGAT                         GTACTTGTCTAACAACCAGTTGACTGGTCTTCCATACTCTCTGAAAGATTT
genomic: CAACTCAGTCAAGCGATCCCGTACCAGCTTCCGCCACAACTACAAGAGATgtacgttctt ... tctatgatagGTACTTGTCTAATAACCAGTTGACTGGTCTTCCATACTCTCTGAAAGATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacgttcttcctagccttgccttgtttattttcctaaaactttctatgatagGTACTTGTCTAATAACCAGTTGACTGGTCTTCCATACTCTCTGAAAGATTTGTGGTCTCTAACGAAAAT
                                  tcctaaa  putative branch site (score: 2)
                                          ctttctat  CT-rich tract
                           tttattttcctaaaa  TA-rich tract