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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgaaactttttctctactggttttctctgttgctactgctgaaaatctgcgtggaaaaatctctccagGATTTGTACGAGGCACAAAAGCAGCTTGTGCTGTACGGGGAGCGCCTCGTCCTCACTACACTAGGATTCGATCTAAACGTTCACCATCCATACAGACCGC

Basic information

species Selaginella moellendorffii
transcript EFJ37217
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169111173|gb|FE511359.1|FE511359
EST:     CTCTTAGGAATAAGAAGGACCCTTCTGCAAATAATCGGATCAAACAAAAG                         GATTTGTACGAGGCACAAAAGCAGCTTGTGCTGTACGGGGAGCGCCTCGTC
genomic: CTCTTAGGAATAAGAAGGACCCTTCTGCAAATAATCGGATCAAGCAAAAGgtctgaaact ... atctctccagGATTTGTACGAGGCACAAAAGCAGCTTGTGCTGTACGGGGAGCGCCTCGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctactggttttctctgttgctactgctgaaaatctgcgtggaaaaatctctccagGATTTGTACGAGGCACAAAAGCAGCTTGTGCTGTACGGGGAGCGCCTCGTCCTCACTACACTAGGATTCGATCTAAACGTTCACCATCCATACAGACCGC
                                              tctctcc  CT-rich tract
                                         aaaaatct  TA-rich tract