Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaaactatctggtgatgttgctaagttggacacgaaattccatctttgacttttttcgctttgtttgcgagcagGGAAACTTCGATCTGGTTGGAAACAACATTCCCGTGTTCTTCGTACGTGATGGCATCAAGTTCCCTGACATGATCCACGCTCTCAAGCCAAACCCAAAGA

Basic information

species Selaginella moellendorffii
transcript EFJ37039
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ37039 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GRMZM2G088212_T02 (Zea mays), 3'ss of exon 2
----------------gtgagtaaactatctggtgatgttgctaagttggacac-------gaaattccatctttgacttttttcgctttgtttgcgagcagGGAAACTTCGATCTGGTTGGAAACAACATTCCCGTGTTCTTCGTACGTGATGGCATCAAGTTCCCTGACATGATCCACGCTCTCAAGCCAAACCCAAAGA
                ||||   || | |  |   |  ||  | |  |    |        |  ||   |||||    |||| |   |  ||||     ||||| ||||| || || || || |||||||| || ||||| ||| |||| ||||| || || |||||||||||| |||||||| ||||||| || |||||||
tgttggatgccttcaagtgacccaatttttagaacactttattgacctttttatatccagagggatagtatcttatggttttcttcatgcgtttttt--cagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATGGGATGAAATTCCCTGACATGGTCCACGCTTTCAAGCCGAATCCAAAGA

upper sequence: EFJ37039 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: PP1S422_8V6.3 (Physcomitrella patens), 3'ss of exon 2
----------------------gtgagtaaactatctggtgatgttgctaagttgg-acacgaaattccatctttgacttttttcgct--ttgtttgcgagcagGGAAACTTCGATCTGGTTGGAAACAACATTCCCGTGTTCTTCGTACGTGATGGCATCAAGTTCCCTGACATGATCCACGCTCTCAAGCCAAACCCAAAGA
                         || | |   |  |||||| |    | | |     |  |  |   |||  | | | ||        |||| |||         |  |       |  | ||| | | |  |      ||  | | |  || |||||   |     ||   |  | | ||| |     | || ||   |  
gtttcatacgatagaagaagtgacaagcataacttagggtgatatgatgatgctactggatcatttcggatcactaaatattgatatcaattgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCA-CATCCAGGA-GGCATGGCGAATAATGGACTTTTTCTCGCACGTTCCCGAATCCTGCA--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaagttggacacgaaattccatctttgacttttttcgctttgtttgcgagcagGGAAACTTCGATCTGGTTGGAAACAACATTCCCGTGTTCTTCGTACGTGATGGCATCAAGTTCCCTGACATGATCCACGCTCTCAAGCCAAACCCAAAGA
                        ctttgac  putative branch site (score: 4)
                              cttttttcgctttgtt  CT-rich tract
                             actttttt  TA-rich tract