1 5' 3' | 2 5' 3' | 3 5' 3' |
gttctcactcttcaagttagcaatcgtgtttttcctttctcacgctgtgcttggtttcagGTCACAGCGATTTCGAGGCGCTTCCAAGTCACTGGAGACGATGAGCTCAGCTACACGGTGGAGATGGCCACCTCGGGTACTAATCAACAGCTTATGCCTC
species | Selaginella moellendorffii |
transcript | EFJ37014 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAACAAGACCGTGACGCTTCACTCCTCGCTAGTGGGAAACGCCAGCAAG GTCACAGCGATTTCGAGGCGCTTCCAAGTCACTGGAGACGATGAGCTCAGCEST: gi|169047556|gb|FE455140.1|FE455140
genomic: AGAACAAGACCGTGACGCTTCACTCCTCGCTAGTGGGAAACGCCAGCAAGgttctcactc ... ttggtttcagGTCACAGCGATTTCGAGGCGCTTCCAAGTCACTGGAGACGATGAGCTCAGC
EST: AGAACAAGACCGTGACGCTTCACTCCTCGCTAGTGGGAAACGCCAGCAAG GTCACAGCGATTTCGAGGCGCTTCCAAGTCACTGGAGACGATGAGCTCAGCEST: gi|169112243|gb|FE509959.1|FE509959
genomic: AGAACAAGACCGTGACGCTTCACTCCTCGCTAGTGGGAAACGCCAGCAAGgttctcactc ... ttggtttcagGTCACAGCGATTTCGAGGCGCTTCCAAGTCACTGGAGACGATGAGCTCAGC
EST: AGAACAAGACCGTGACGCTTCACTCCTCGCTAGTGGGAAACGCCAGCAAG GTCACAGCGATTTCGAGGCGCTTCCAAGTCACTGGAGACGATGAGCTCAGC
genomic: AGAACAAGACCGTGACGCTTCACTCCTCGCTAGTGGGAAACGCCAGCAAGgttctcactc ... ttggtttcagGTCACAGCGATTTCGAGGCGCTTCCAAGTCACTGGAGACGATGAGCTCAGC
cactcttcaagttagcaatcgtgtttttcctttctcacgctgtgcttggtttcagGTCACAGCGATTTCGAGGCGCTTCCAAGTCACTGGAGACGATGAGCTCAGCTACACGGTGGAGATGGCCACCTCGGGTACTAATCAACAGCTTATGCCTC
ttctcac putative branch site (score: 15)
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctcactcttcaagttagcaatcgtgtttttcctttctcacgctgtgcttggtttcagGTCACAGCGATTTCGAGGCGCTTCCAAGTCACTGGAGACGATGAGCTCAGCTACACGGTGGAGATGGCCACCTCGGGTACTAATCAACAGCTTATGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG