1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatttctggttctttgtttttctcatggtggtcgcgtaaacgaagcctatgctgtgttttcattgtcttctcggtttatttttcttaacgtacagAGCTACGGAGAATATGTTGGTGGTCACATTTCTGACGAGCAGCGACTGAAAGTTTTGCAACATTCATGTCCAGGTGCTGGAGCTTGTGGTGGAATGTACA
species | Selaginella moellendorffii |
transcript | EFJ36478 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAGGAATCGTGAACGGGCATACGTACGATATAGTGTCAGCTTTCCAG AGCTACGGAGAATATGTTGGTGGTCACATTTCTGACGAGCAGCGACTGAAAEST: gi|169078740|gb|FE486522.1|FE486522
genomic: CCAGGAATCGTGAACGGGCATACGTACGATATAGTGTCAGCTTTCCAGgtatttctgg ... taacgtacagAGCTACGGAGAATATGTTGGTGGTCACATTTCTGACGAGCAGCGACTGAAA
EST: --A-GAATCGTGAACGGGCATACGTACGATATAGTGTCAGCTTTCCAG AGCTACGGAGAATATGTTGGTGGTCACATTTCTGACGAGCAGCGACTGAAAEST: gi|169077551|gb|FE484631.1|FE484631
genomic: CCAGGAATCGTGAACGGGCATACGTACGATATAGTGTCAGCTTTCCAGgtatttctgg ... taacgtacagAGCTACGGAGAATATGTTGGTGGTCACATTTCTGACGAGCAGCGACTGAAA
EST: CCAGGAATCGTGAACGGGCATACGTACGATATAGTGTCAGCTTTCCAG AGCTACGGAGAATATGTTGGTGGTCACATTTCTGACGAGCAGCGACTGAAA
genomic: CCAGGAATCGTGAACGGGCATACGTACGATATAGTGTCAGCTTTCCAGgtatttctgg ... taacgtacagAGCTACGGAGAATATGTTGGTGGTCACATTTCTGACGAGCAGCGACTGAAA
cgaagcctatgctgtgttttcattgtcttctcggtttatttttcttaacgtacagAGCTACGGAGAATATGTTGGTGGTCACATTTCTGACGAGCAGCGACTGAAAGTTTTGCAACATTCATGTCCAGGTGCTGGAGCTTGTGGTGGAATGTACA
tcttaac putative branch site (score: 10)
tcttctcggtttattt CT-rich tract
tttatttttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttctggttctttgtttttctcatggtggtcgcgtaaacgaagcctatgctgtgttttcattgtcttctcggtttatttttcttaacgtacagAGCTACGGAGAATATGTTGGTGGTCACATTTCTGACGAGCAGCGACTGAAAGTTTTGCAACATTCATGTCCAGGTGCTGGAGCTTGTGGTGGAATGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA