1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcttgctggctctagatcttgaaagaaaacaaatcttttcctcttgatttcacgtagATCCACACCCTCCTCAGAGAAGTTTGCGATGAGACGAAGATCGCGGAGCTTAATGTCAAG
species | Selaginella moellendorffii |
transcript | EFJ35760 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATCGAGGAGCTGGAGCCGGTGATCCCGACCTCTGCGGAA ATCCACACCCTCCTCAGAGAAGTTTGCGATGAGACGAAGATCGCGGAGCTTEST: gi|169086798|gb|FE494123.1|FE494123
genomic: AAATCGAGGAGCTGGAGCCGGTGATCCCGACCTCTGCGGAAgtaagcttgc ... tttcacgtagATCCACACCCTCCTCAGAGAAGTTTGCGATGAGACGAAGATCGCGGAGCTT
EST: AAATCGAGGAGCTGGAGCCGGTGATCCCGACCTCTGCGGAA ATCCACACCCTCCTCAGAGAAGTTTGCGATGAGACGAAGATCGCGGAGCTT
genomic: AAATCGAGGAGCTGGAGCCGGTGATCCCGACCTCTGCGGAAgtaagcttgc ... tttcacgtagATCCACACCCTCCTCAGAGAAGTTTGCGATGAGACGAAGATCGCGGAGCTT
ttgctggctctagatcttgaaagaaaacaaatcttttcctcttgatttcacgtagATCCACACCCTCCTCAGAGAAGTTTGCGATGAGACGAAGATCGCGGAGCTTAATGTCAAG
tcttgat putative branch site (score: 26)
tcttttcctcttgatt CT-rich tract
aaaacaaatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttgctggctctagatcttgaaagaaaacaaatcttttcctcttgatttcacgtagATCCACACCCTCCTCAGAGAAGTTTGCGATGAGACGAAGATCGCGGAGCTTAATGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT