1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcgttctcttcgttttttatcttcattttctagctcacgatcaaacgatttgtagGTTACTAGCAAAGTTGGAGGGTGCTTCCCGCGCGTTTTGTTTTACCAGTGGAATGGCTGCGCTAAGTGCTGCATCCCATCTAGTTTCAGCAG
species | Selaginella moellendorffii |
transcript | EFJ35548 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTATGACTACACGAGAAGTGGGAATCCAACTCGTGATGCTCTTGAATC GTTGCTAGCAAAGTTGGAGGGTGCTTCCCGAGCGTTTTGTTTTACCAGTGGEST: gi|169072649|gb|FE481601.1|FE481601
genomic: CAGTATGACTACACGAGAAGTGGGAATCCAACTCGTGATGCTCTTGAATCgtaagcgttc ... cgatttgtagGTTACTAGCAAAGTTGGAGGGTGCTTCCCGCGCGTTTTGTTTTACCAGTGG
EST: CAGTATGACTACACGAGAAGTGGGAATCCAACTCGTGATGCTCTTGAATC GTTGCTAGCAAAGTTGGAGGGTGCTTCCCGAGCGTTTTGTTTTACCAGTGGEST: gi|169073932|gb|FE481657.1|FE481657
genomic: CAGTATGACTACACGAGAAGTGGGAATCCAACTCGTGATGCTCTTGAATCgtaagcgttc ... cgatttgtagGTTACTAGCAAAGTTGGAGGGTGCTTCCCGCGCGTTTTGTTTTACCAGTGG
EST: CAGTATGACTACACGAGAAGTGGGAATCCAACTCGTGATGCTCTTGAATC GTTACTAGCAAAGTTGGAGGGTGCTTCCCGCGCGTTTTGTTTTACCAGTGGEST: gi|169064736|gb|FE473716.1|FE473716
genomic: CAGTATGACTACACGAGAAGTGGGAATCCAACTCGTGATGCTCTTGAATCgtaagcgttc ... cgatttgtagGTTACTAGCAAAGTTGGAGGGTGCTTCCCGCGCGTTTTGTTTTACCAGTGG
EST: CAGTATGACTACACGAGAAGTGGGAATCCAACTCGTGATGCTCTTGAATC GTTGCTAGCAAAGTTGGAGGGTGCTTCCCGAGCGTTTTGTTTTACCAGTGG
genomic: CAGTATGACTACACGAGAAGTGGGAATCCAACTCGTGATGCTCTTGAATCgtaagcgttc ... cgatttgtagGTTACTAGCAAAGTTGGAGGGTGCTTCCCGCGCGTTTTGTTTTACCAGTGG
gcgttctcttcgttttttatcttcattttctagctcacgatcaaacgatttgtagGTTACTAGCAAAGTTGGAGGGTGCTTCCCGCGCGTTTTGTTTTACCAGTGGAATGGCTGCGCTAAGTGCTGCATCCCATCTAGTTTCAGCAG
agctcac putative branch site (score: 6)
ttttttatcttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgttctcttcgttttttatcttcattttctagctcacgatcaaacgatttgtagGTTACTAGCAAAGTTGGAGGGTGCTTCCCGCGCGTTTTGTTTTACCAGTGGAATGGCTGCGCTAAGTGCTGCATCCCATCTAGTTTCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC