1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaccgcatcatttattgtttgttcttttctgatgtctttgctcgcagGCGGCTACTGTCAAGCAAAATCTTCTCCAGTTTTCGGGCCATTGTTGGGGAGAGAAG
species | Selaginella moellendorffii |
transcript | EFJ35496 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCCTGTATTGAAGACTCTCCACTACGTCTTCTTCGCTCAGCGGTCTAAG GCGGCTACTGTCAAGCAAAATCTTCTCCAGTTTTCGGGCCATTGTTGGGGAEST: gi|169051804|gb|FE457959.1|FE457959
genomic: ATCCTGTATTGAAGACTCTCCACTACGTCTTCTTCGCTCAGCGGTCTAAGgtaaccgcat ... ttgctcgcagGCGGCTACTGTCAAGCAAAATCTTCTCCAGTTTTCGGGCCATTGTTGGGGA
EST: ATCCTGTATTGAAGACTCTCCACTACGTCTTCTTCGCTCAGCGGTCTAAG GCGGCTACTGTCAAGCAAAATCTTCTCCAGTTTTCGGGCCATTGTTGGGGAEST: gi|169078797|gb|FE487580.1|FE487580
genomic: ATCCTGTATTGAAGACTCTCCACTACGTCTTCTTCGCTCAGCGGTCTAAGgtaaccgcat ... ttgctcgcagGCGGCTACTGTCAAGCAAAATCTTCTCCAGTTTTCGGGCCATTGTTGGGGA
EST: ATCCTGTATTGAAGACTCTCCACTACGTCTTCTTCGCTCAGCGGTCTAAG GCGGCTACTGTCAAGCAAAATCTTCTCCAGTTTTCGGGCCATTGTTGGGGA
genomic: ATCCTGTATTGAAGACTCTCCACTACGTCTTCTTCGCTCAGCGGTCTAAGgtaaccgcat ... ttgctcgcagGCGGCTACTGTCAAGCAAAATCTTCTCCAGTTTTCGGGCCATTGTTGGGGA
gtaaccgcatcatttattgtttgttcttttctgatgtctttgctcgcagGCGGCTACTGTCAAGCAAAATCTTCTCCAGTTTTCGGGCCATTGTTGGGGAGAGAAG
ttctgat putative branch site (score: 22)
tctttgctc CT-rich tract
atcatttattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccgcatcatttattgtttgttcttttctgatgtctttgctcgcagGCGGCTACTGTCAAGCAAAATCTTCTCCAGTTTTCGGGCCATTGTTGGGGAGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA