1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagctatggttatgtgctggtttaagttgtggttctcatcaaagctttttcgcagTGACCTTGGCTGCCATATCGACGGCTTTGTGGCCGTAGTCGCTCACACGCACGTCCTCCAGGAGGGTCCAGTGACTGGAAGAGCAGCGGATGTTTTAGCA
species | Selaginella moellendorffii |
transcript | EFJ35350 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCTTGGCTGGCGATGAGACGGCTCTGTCCGAGGGTGACATTGTAAAGAT TGACCTCGGCTGCCATATCGACGGCTTTGTGGCTGTAGTCGCTCACACGCAEST: gi|169069244|gb|FE480029.1|FE480029
genomic: CCCTTGGCTGGCGATGAGACGGCTCTGTCCGAGGGTGACATTGTAAAGATgtaagctatg ... tttttcgcagTGACCTTGGCTGCCATATCGACGGCTTTGTGGCCGTAGTCGCTCACACGCA
EST: CCCTTGGCTGGCGATGAGACGGCTCTGTCCGAGGGTGACATTGTAAAGAT TGACCTCGGCTGCCATATCGACGGCTTTGTGGCTGTAGTCGCTCACACGCAEST: gi|169055673|gb|FE465304.1|FE465304
genomic: CCCTTGGCTGGCGATGAGACGGCTCTGTCCGAGGGTGACATTGTAAAGATgtaagctatg ... tttttcgcagTGACCTTGGCTGCCATATCGACGGCTTTGTGGCCGTAGTCGCTCACACGCA
EST: CCCTTGGCTGGCGATGAGACGGCTCTGTCCGAGGGTGACATTGTAAAGAT TGACCTCGGCTGCCATATCGACGGCTTTGTGGCTGTAGTCGCTCACACGCAEST: gi|169065059|gb|FE474507.1|FE474507
genomic: CCCTTGGCTGGCGATGAGACGGCTCTGTCCGAGGGTGACATTGTAAAGATgtaagctatg ... tttttcgcagTGACCTTGGCTGCCATATCGACGGCTTTGTGGCCGTAGTCGCTCACACGCA
EST: CCCTTGGCTGGCGATGAGACGGCTCTGTCCGAGGGTGACATTGTAAAGAT TGACCTTGGCTGCCATATCGACGGCTTTGTGGCCGTAGTCGCTCACACGCA
genomic: CCCTTGGCTGGCGATGAGACGGCTCTGTCCGAGGGTGACATTGTAAAGATgtaagctatg ... tttttcgcagTGACCTTGGCTGCCATATCGACGGCTTTGTGGCCGTAGTCGCTCACACGCA
aagctatggttatgtgctggtttaagttgtggttctcatcaaagctttttcgcagTGACCTTGGCTGCCATATCGACGGCTTTGTGGCCGTAGTCGCTCACACGCACGTCCTCCAGGAGGGTCCAGTGACTGGAAGAGCAGCGGATGTTTTAGCA
ctttttcgc CT-rich tract
tttaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctatggttatgtgctggtttaagttgtggttctcatcaaagctttttcgcagTGACCTTGGCTGCCATATCGACGGCTTTGTGGCCGTAGTCGCTCACACGCACGTCCTCCAGGAGGGTCCAGTGACTGGAAGAGCAGCGGATGTTTTAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG