1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttgttctttcctcgacaaccaagagagagctctcgtgttctaaatggtttttcgttccttttctttcgctcgctcgctcgatcgatcgatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCCTCGTCCCCGAGATCGCCCACATGTACAAGACCGACAGGCCCAAGTATG
species | Selaginella moellendorffii |
transcript | EFJ35297 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169078304|gb|FE490337.1|FE490337
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169105950|gb|FE504310.1|FE504310
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169038738|gb|FE446959.1|FE446959
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|70670995|gb|DN839572.1|DN839572
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|70670805|gb|DN839382.1|DN839382
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169105396|gb|FE506420.1|FE506420
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|70670872|gb|DN839449.1|DN839449
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169022096|gb|FE429105.1|FE429105
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169112483|gb|FE512760.1|FE512760
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169039764|gb|FE449426.1|FE449426
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169079016|gb|FE488579.1|FE488579
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|70670087|gb|DN838664.1|DN838664
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169086731|gb|FE494368.1|FE494368
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169020751|gb|FE430152.1|FE430152
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169079924|gb|FE487368.1|FE487368
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169095814|gb|FE498895.1|FE498895
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169020893|gb|FE429306.1|FE429306
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169046060|gb|FE453957.1|FE453957
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169026535|gb|FE434796.1|FE434796
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169032175|gb|FE439289.1|FE439289
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169082868|gb|FE491120.1|FE491120
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169032189|gb|FE439290.1|FE439290
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169046059|gb|FE453956.1|FE453956
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169061380|gb|FE470428.1|FE470428
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|70669831|gb|DN838408.1|DN838408
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAACCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169081704|gb|FE488162.1|FE488162
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169078305|gb|FE490338.1|FE490338
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|70669414|gb|DN837991.1|DN837991
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCEST: gi|169092996|gb|FE495290.1|FE495290
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
EST: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAG GTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
genomic: GTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctt ... gatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCC
aatggtttttcgttccttttctttcgctcgctcgctcgatcgatcgatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCCTCGTCCCCGAGATCGCCCACATGTACAAGACCGACAGGCCCAAGTATG
ttctaaa putative branch site (score: 90)
ttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttctttcctcgacaaccaagagagagctctcgtgttctaaatggtttttcgttccttttctttcgctcgctcgctcgatcgatcgatttaccagGTGCTGCTATCAATCTGCTCGTTGCTAACCGACCCAAACCCCGACGATCCCCTCGTCCCCGAGATCGCCCACATGTACAAGACCGACAGGCCCAAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC